Report for 1047.m00096

 > 1047.m00096, length: 1461, copies: 1 

MPLFHQILKTFFHALIIAEVILGQSDREVLLELKNFLQFQNPINHGGYNSWPESGTSPCHWQGVGCDASGRVNFL

DLSNSNISGPAFQNLSRLSGLTHLDLSANSITGELHDDLKNCLHLQYLNLSYNLISGILDVSSLANLQTLDVSQN

RFEGGISANFPAICRNLSAINLSSNNLTGSISGLFNNCLKLQDVDLSWNSFTGNVWNGIARLRQFKAGKNNFAGS

ISSRIFSTGCKLQLLDLSSNHFYGNFPSSIANCAGLTYLSIWDNHFNGSIPPGIGSIHGLEELVLTSNHFDREIP

LELMNCTSLKYLDISDNNFGGEVQQVLGKLTSLTNLVLQENNYSGGIVSSGILELPKLALLDLSFNNFNGKLPTE

IASMGSIKALMLAENNFSGTIPPSYGQLVNLQALDLSYNSLSGEIPPSIGNLTLLLLLMLAGNQLSGEIPREIGN

CTSLLWLNLVGNRLSGQIPPEMAGMGRNPSSTFAKNQKNPSLMKSVTSKCLAVYRWVPSSYPEFDYVQSMMFSHK

NCRTIWNRLLMGYDILPASSPLRTALGYVQLSGNLLSGQIPSAIGAMKNISLLLLDGNRLSGHLPSEIGSLQLVS

LNASNNSISGEIPFEIGNLGSIESLDLSCNNFSGSLPSSLEKLSKLSQFNVSYNPLLTGEVPSSGQLSTFSELSF

LGDPLLSWRSAAGHPRPKNGTGFFFNGTEYPTKEDISVPCRLPSPPETGPGGGTGGGEGAGGSGGEGELDGRSAP

DFLPPPTSNLSGLTASFAAKGLSVFILESSRRRSSMSGVTASRVMVGSPAAALLAFALHCCVREAASTGLMSEPD

ELRRSEKEAQCNLPMECAPESTTRSPTPSPLAAKKLASLPSPVAAAAALLSAPTRLHDHPFAACVLYRLARARLF

PLVPPLLATLHSRGAPLRPSVLAAASRPDAAVLVFRAVPAFCSHSAATFHSLLNALVSNGRADAARDMLQLAPKL

GVREGELGAAERLIDEMVRRGVAPNAATYSLLMQGLCDADLHADAEKLMFDMEYRGYQAEVVNYGVLTSSRARRG

DVNGVRELLSAMRKRKLKPDDASYNVLIKCPCDVGRVDEAHRALLDMQLKGTVPGAANVPRPRRRVLQGSRLRAG

STGFQRDVGERTLSSTSHLVRGLGEDGKVEEACFVLEQMARREMSLDADGWQAVVTCVRSSRSTQAIRDDLRPGK

MMAVALKEFKTFEDKLALQKLPVGNDNYRDIIEKRLVIKLIIEKAGVMFECDRCVNQHNDPLRSAAEHIKKISRI

DTQSWDLMKVAAAFKVICCPGEKNEPEEWLMPVCFFQLFTRLQLEWFRDDAPKYKDKILKVSWLIVYNEIFRARE

LRLKTARVLLCLVKRAKEAYEAEQAGEAASDNEIGPDGKEIHPGITPVIIDELTECVCDIILSAGRKERQRFIFP

EAEVASESGDVSNMVIEKLGARIQQDAFPFANIYQL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	71	94	6.5
LRR [Pfam ls]	95	118	0.22
LRR [Pfam ls]	119	140	0.13
LRR [Pfam ls]	141	161	1.1
LRR [Pfam ls]	166	189	2.2
LRR [Pfam ls]	236	259	2.9
LRR [Pfam ls]	308	331	0.17
LRR [Pfam ls]	357	380	4.2
LRR [Pfam fs]	405	428	2.8e-05
LRR [Pfam ls]	405	428	0.00045
LRR [Pfam ls]	429	452	8.1
LRR [Pfam ls]	453	476	3.9
LRR [Pfam ls]	597	620	0.2
LRR [Pfam ls]	621	644	0.011

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	71	94	0.21
LRR [sensitive, ls]	71	94	6.5
LRR [sensitive, ls]	95	118	0.0069
LRR [sensitive, ls]	95	118	0.22
LRR [sensitive, ls]	119	140	0.0042
LRR [sensitive, ls]	119	140	0.13
LRR [sensitive, ls]	141	161	0.036
LRR [sensitive, ls]	141	161	1.1
LRR [sensitive, ls]	166	189	0.071
LRR [sensitive, ls]	166	189	2.2
LRR [sensitive, ls]	190	216	0.48
LRR [sensitive, ls]	190	216	15
LRR [sensitive, ls]	236	259	0.092
LRR [sensitive, ls]	236	259	2.9
LRR [sensitive, ls]	260	283	0.31
LRR [sensitive, ls]	260	283	9.7
LRR [sensitive, ls]	284	307	0.55
LRR [sensitive, ls]	284	307	17
LRR [sensitive, ls]	308	331	0.0055
LRR [sensitive, ls]	308	331	0.17
LRR [sensitive, ls]	357	380	0.14
LRR [sensitive, ls]	357	380	4.2
LRR [sensitive, ls]	381	404	0.54
LRR [sensitive, ls]	381	404	17
LRR [sensitive, ls]	405	428	1.4e-05
LRR [sensitive, ls]	405	428	0.00045
LRR [sensitive, ls]	429	452	0.26
LRR [sensitive, ls]	429	452	8.1
LRR [sensitive, ls]	453	476	0.12
LRR [sensitive, ls]	453	476	3.9
LRR [sensitive, ls]	550	573	0.28
LRR [sensitive, ls]	550	573	8.8
LRR [sensitive, ls]	574	594	1.7
LRR [sensitive, ls]	574	594	54
LRR [sensitive, ls]	597	620	0.0062
LRR [sensitive, ls]	597	620	0.2
LRR [sensitive, ls]	621	644	0.00034
LRR [sensitive, ls]	621	644	0.011
LRR [sensitive, ls]	645	668	1.8
LRR [sensitive, ls]	645	668	55

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	26	678	8e-61
FLS2 [A.thaliana]	32	666	5e-69
Cf-9 [L. pimpinellifolium]	50	688	9e-45
CLV2 [A. thaliana]	55	664	5e-62
Cf-9 [L. pimpinellifolium]	72	397	2e-19
FLS2 [A.thaliana]	74	664	2e-67
Cf-9 [L. pimpinellifolium]	75	469	1e-39
Cf-9 [L. pimpinellifolium]	75	475	2e-34
FLS2 [A.thaliana]	75	639	2e-61
FLS2 [A.thaliana]	75	488	3e-39
Cf-9 [L. pimpinellifolium]	90	678	5e-50
Xa21 [O. sativa]	90	397	4e-28
Cf-9 [L. pimpinellifolium]	327	689	2e-17
FLS2 [A.thaliana]	545	680	2e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
PPR repeat	947	981	0.094
PPR repeat	1002	1036	0.0019
PPR repeat	1037	1071	0.056
PPR repeat	1072	1106	0.0011
PPR repeat	1139	1173	0.0078

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1047.m00096

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)