Report for 1893.m00184

 > 1893.m00184, length: 876, copies: 2 

MVKAISEAADSRLITNTNLLHWLMRLHAAAQEAKDVLDEFEVDGSNIARKRKASDLILSSRSLKNLVIADESLKR

IKIPSIIFKISRNGKFFSKLSLKNLVIPDESLTRLEHVVKTLTQLCATSATFIELIKMDDSKTNQLHKAAEASSH

LPVDVPVFGRDEVKEFILNHDHPESSIGTGKVRAARHNILVLPIVGMSGVGKTTLAQVIYNHARVKQHFEHRAWV

YVSEDFTIKRTLQEILHSFQGHGGAIFNGDESMEATITKLRIKISGGCKFFLVLDNMWEEMCQEWSVLLTALSDE

APLPWESFWPLFQYHTFGGVEVPQQDDNRNMLLIAQGIAKKLDGLPLAAKVIGNLLRCRFSWDNWRRVAESDWWN

LEEALQGILPYLRDRVVQMWLAHDFIQWNEIADVMRPDDVGRQLFDELVERSFFQPTFVSNNNSVSLHQCFFHGE

RSTGVSSLAPGNIRHLALQVNSLEQCQELHKYRNLRTLLIFGRCESDAFFNLLDGMLEKSPSIRVLDLLIRGKPD

LLDVDLHHLSYVKAPGKVWPKDARPLRKLRFLDLSFTKITKLKDLPTNLQVLHLRGYDADRVPQSITKLTNLRHL

YVDGSALSKIQSIGQQTELQELESFIARKGQGFMIRELKNMREFTGRLCIRGIENIRSKDEAMEARLMDKKHVGA

LVIEGKRVPKFALEGLQPHTNIQELTIKFFQEQDFPDWVCPDNLVNLLQVNLESYHFLSTIPPLGHLPLLKLLTL

RKLPSVKHANGTSFGGFPSLEEFELHSMEKWEEWTEPDAAAHAYGLSLFLGHLRKLHLAYCPSLRRFPHLPCFIC

IERAEDLQAWKLDPGITSMFSSLVIPNNLGSRVLQPQRCNVRATVQVPRKY

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	140	406	3e-12
NB-ARC [Pfam fs]	184	300	4.6e-19
LRR [Pfam ls]	553	575	0.5
LRR [Pfam ls]	596	617	4.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	553	575	0.022
LRR [sensitive, ls]	553	575	0.5
LRR [sensitive, ls]	596	617	0.22
LRR [sensitive, ls]	596	617	4.9
LRR [sensitive, ls]	721	743	1.2
LRR [sensitive, ls]	721	743	28
LRR [sensitive, ls]	802	824	0.51
LRR [sensitive, ls]	802	824	11

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	2	814	2e-57
Pib [Oryza sativa].	51	601	7e-13
Xa1 [Oryza sativa]	109	818	1e-42
RPM1 [A. thaliana]	171	686	2e-15
Mla1 [Hordeum vulgare].	184	623	3e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1893.m00184

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)