Report for 1916.m00118

 > 1916.m00118, length: 1473, copies: 1 

MAELASGAVSSLLGVLRNEALLLGRVGNDVEFIKEEMESMHSFLEHLARTAPPVGGGGHDEQVRTWMKQVRELAH

DCSNCIDIYLQHGDPAVYRARRGRCRCLWWASWLVHRVVAQHHAATRLRELKERARDVGERRIRYGVVVHDKAPL

AAPSSSPPDQAADTEEEDDDDDDRNQMAAAAADSCDDHRRRLLEPRALDDYCAEKLLGWLKLQAETGRAAAAGLM

PSIAIVAQGGADNAGAIARQSLDLAAVHFDRRVWINLRDVHHPWDLPLLPEEILCYILHRCQHQGTSDHVGGEYG

RWQAYSYRSDVYNEIHTTIAQMKVDDKIEEIKGKIEQLESGKSNNLEKNKSSKTLNPITLSDKPLGILVEALRFA

PMAPECKPLSSDEEIMQEAVEMLKEHMEAPAGKAAEPLIRLDNTQYELILQKMFPPASTKPPPQSEQAAASTLGE

DHIREIVHNHKITLEIIRELLLPMRHLLDGNSVKEQTTCVTKGEGANSVAAANEEAKEKMVDEDENKTRLLMEGI

TQDLLSKSSKLQLLQGNYVEEQTKQLGMGGHDKISNNAVVDAIKGTKDKMYEMSLEIKDQLFIKGIVDKIKDHLD

NKKAVIVLQDEEEYVSQWEKTRNALSLLGCATGSAVIVATKNNQRAKEFCFPPGEPVTYSLVGLYHDRVLKLTNQ

RENQDDYNRQILRDILDKCDPQEFSMKMFMHALYANPNRSNEELCKLHEALQVPQNSLATSNAKKIFKFSYRDLP

REHRTCLLYLAIFPPGHKIRRSTIIARWLTEGLITKEDWPTAVRHAERCFDALINRWLVWPSDIGAAGKVKSCMV

CDPIHGFITKMAKKQHILDARLSDLWARHFSIFSGLRLRASDGIDKFVHKLPKYSPQLALLKVLDLENCQCFNKN

HYLKDICNKILLLKYLSVRGTNVTHLPSEINNLHELEVLDIQQTKMPEHTTRDVMLLKLRRLLAGHVNQRHSHDM

GMPIGDEMSLYSSVRIPRKIEKMENIEVLSNVKASWDGNELKNIRKLWRLRKFGVVIHDKDSHLDKLLRAISDLK

ECLQSLSITVYETKSEGISPNKQLLLPEMFGRLVQPPKLLESLSINGLTHRVRLLPLLARGSNELAKVTLSGTEL

KQNDLMVMAVLPNLCCVRFQHKAYTERTLTFKVDEFQHLKYFLVEGVNMTDIIFENGAAPELEHIILSFTNICSL

CGIGCLPKLMELQLKGNNSILSLPQDRIAPDMNSESRLLTFKKGEFEQLKNFVVEGPNMTDIIFEKEAAPKLQKI

VLSLTNVNSLSGVEGLPKLKEIELKGHKFLLSFFANANQITKVTLCDTLLKQEDMHILANKPNMGSIVLLDKSYD

ESQLAFNKDEFPKLNLLIVECSTIINISFADGSAPKLEKIVWHFSRKDFCLLSGIANLPEFKELEFNGDFVPDKV

RKAINAHKRKPILTHKKPQHHGPAPKEEDETRFPWISNLFSKKQEDRR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	479	789	3.2e-05
NB-ARC [Pfam fs]	741	789	1.5e-08

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	912	934	0.16
LRR [sensitive, ls]	912	934	3.8
LRR [sensitive, ls]	1186	1207	0.68
LRR [sensitive, ls]	1186	1207	16
LRR [sensitive, ls]	1271	1292	2.5
LRR [sensitive, ls]	1271	1292	57

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	559	1190	5e-22
Mla1 [Hordeum vulgare].	591	1193	1e-25
Pib [Oryza sativa].	591	1214	1e-23
Pi-ta [Oryza sativa]	591	1032	1e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1916.m00118

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)