Report for 1917.m00167

 > 1917.m00167, length: 2599, copies: 1 

MAAPPNSPIGWWREVRARLWLHTVEVEVNFLAHPFVVYSHFPLFESGSPPSFSLKAALHLISKKKDQGPLLLGVS

CSSDLTTSQIATKKLYFAKMKDSAYDADDVMDEFDYLILKANAQQKSKLSSLASSSLAIGKRLVGQDKFRSKLRR

VLNSLIRVKECADMLIKVIGAENSNSYMPPQPLQWRVTSSISPGQIIIGRQNEQDDLVHRLLREADGPEPSRGLT

ISPTPSIITIVGSGGIGKTALAQLIYNDRRIVSGFDLRTWIYVSNIFNKVKITKEILKSIDRNSDITNFSFNMLQ

EDLKNKLTAKKFLLVLDDVWYDEKIGELTNADRWRELFAPLCYGAKGSKILVTARTNIVSRILGCPAPFHLEGLK

GEDSWNLFRICAFGAEDPGNYPELESIGECIVQKLNGSALVIKVVGAHLNANLNVEEWTRVMKSSSSNKEDIMQI

LRLSYECLPGHLQQCFTFCSLFPKGYSLEPDLLVNMWIAHKFVHGHIGTYESMRETGRSYFNELLSRSFFQELQY

GHTIRYVMHDLMNDLASHISRAAPRRCAMSDARSRRLVASSTWRQQDAELAAAEERRRATAQTAAAAAARVAKLA

AVELAAARAEAEAEAAEDAARAAEVEVETLRSSINGSIAGDITADRELEELARGRAWERAERWAAAHLHGGGGGP

RDRAPADGNPDGRWRAGGSPEPARGPRRQRGSLSPDWRHGHHGVQTVVRDFGPGGGWPTLTKTNYIEWAAVMRVR

LQSGTGDVDYDEDRRALDALIAAVPPEMQFSLSQKRTAKEAWDAIAAARIGSDRARKSTLQALRKEWENLPFKPG

EDVDDFALRLNTLLQKMVQYGDDTYDEERAVEKLFRCVPEKYRQIARSIESLLDLSTMSIEEALGRLKVVDGDEP

QPLSGPITIGGKLNLTREQWEASQGDGRKGESSSPTGGRKPRKARGGVQLRWARRRAEGGARRGAQGVATGNHKP

ARDNACRNCGKLGHWAKDCRQPRRGQAHVARVEEEEPALLLAHASIELPPAAPAAAAFLHLDEPKVLVSLCNGSS

NDKADGCVQGSVKFGDASGVEIKGVGSVTFTAKSGEHRLLTGVYYIPALRNSIISVGQLDENGSRVLVEDGLMRI

WDRRRRLLAKVTRGTNQLYILSAQVAQPVCLAARRDDEAWQWHERFGHLHFEALKQLSAKEMVRGMPCLDHVEQL

CDVCVVTKQRRLPFPQQTSFRAKERLELVHGDLCGPVTAATPGGRRYFLLLVDDLSRYMWVMVLGSKGEAADAIR

HAQATAEAECDRKLRRGMPAIFWGEAVVTAAYILNRSPTKALDGRTPYEAWHGRKPAVSHLWVFGCLAFAKELGH

IGKLDDRSTPGVFIGYAEGSKAYRILDLETQRVRTARDVVFDEGRGWVWDKAVDDGSTPMYDDFTVEYVHFEGAG

GVGSSSSSSVSTPAPESPPTPTPTHPRATTSTTTSSSSTPPQPVTPHAPAPTVTPPSTSTSTPARVERSPVEFAT

PLSHDGERIAYHDGEQLRYRTMEDLLGDQPVPGLVPRDLEAQLHLACDDGEPRSFAEAEKHAAWRAAMQSEMDAV

QENRTWELADLPRGHRAITLKWVFKLKRDEAGAIVKHKARLVARGFVQQEGIDYDDAFAPVARMESVRLLHALAA

QEGWGVHHMDVKSAFLNGDLKEEVYVHQPPGFVIPGKEGKVLRLHKALYGLRQAPRAWNAKLDSTLKGMGFEQSP

HEAAIYRRGNGGNALLVGVYVDDLVITGTKDAEDDSGITLRQTAYAKRVVELAGLTDCNPALTPMEERLKLSRDS

TAEEVDATQYRRLVGSLRYLTHTRPDLAFSVGYVSRFMQRPTTEHQQAVKRIIRYVAGTLDHGLYYPRCPGKAHF

VGWQSVKQQVVALSSCEAEYMAASAASTQALWLARLLSDLLGRDTGTVELRVDSKSALALTKNPVFHERSKHIRV

RYHFIRSYLEEGSIKASYINTKDQLADLLTKPLGRIKLGGCSNRLAASYGYIYVSNLPRLPSSHMPCLRAAGEFC

VDKSKVQGLEVLKQMNELQGSLAITSLENVKSRDEATDAQLFRKSQIFKLKLQWGSSNASSKSDKANDVFDALRP

HSGLEELIVQGYPGCVSPSWLESEWLSRLRHISISDCKCWKLLPSLGQIQSLRTLRIARLNAVVCIGPEFYGTAG

FPSLEILEMIELPELAEWSSVDCFFPALLEVCIRGCPKLKQLPPVVLPPVRMSIYVSTEVCRLRNHNRLETCFTQ

EVSLSTLLDMLHLRRLEPVKCVNIIFEGANTLEDGLKDVTTNLPSLEELVIRGCSDLQHAFAASKQREEDGNVFS

SASIQCLKMIGCNLTVDIFLSVFQNISFLSLWINDCNITYSTPERVLAMPKSVTGVLEKLCILSCDGLTAFMGLE

TFLRLSTIEIASCPKLTSVPDFRCLPALQNLIIKNCPELKELPENGNLTTLTALVVEHCNALISLRNLRDLSFLS

KLVVRNCMKLMALPQMISFSSLRVLIIKNCPEVVSLPEDGLPVSLNCLYLAGCHPVLEEQFDQKNGSEWEKYEVL

PFCFFADKSIEDIEEIAKEVLMADDLTRISIQGNRVHATDSAASSSSFP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	183	498	2.5e-59
NB-ARC [Pfam ls]	183	498	1.7e-59
LRR [Pfam ls]	2404	2426	4.8
LRR [Pfam ls]	2496	2517	6.6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
Integrase core domain [fs]	1221	1275	2.4e-09
Integrase core domain [fs]	1287	1327	5.3e-08
LRR [sensitive, ls]	2128	2150	1.2
LRR [sensitive, ls]	2128	2150	28
LRR [sensitive, ls]	2202	2226	5
LRR [sensitive, ls]	2202	2226	120
LRR [sensitive, ls]	2404	2426	0.21
LRR [sensitive, ls]	2404	2426	4.8
LRR [sensitive, ls]	2427	2449	1
LRR [sensitive, ls]	2427	2449	23
LRR [sensitive, ls]	2450	2472	3
LRR [sensitive, ls]	2450	2472	69
LRR [sensitive, ls]	2496	2517	0.28
LRR [sensitive, ls]	2496	2517	6.6

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	58	541	8e-61
RPM1 [A. thaliana]	78	546	2e-35
Pi-ta [Oryza sativa]	78	521	3e-19
Mla1 [Hordeum vulgare].	89	548	2e-32
Xa1 [Oryza sativa]	157	546	3e-61
Pib [Oryza sativa].	186	574	1e-23
N [N. glutinosa]	232	544	1e-10
RPS2 [A. thaliana]	232	493	2e-17
I2 [L. esculentum]	2001	2551	2e-32
Xa1 [Oryza sativa]	2015	2525	5e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Zinc knuckle	979	996	3.4e-07

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	597	635

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1917.m00167

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)