Report for 1917.m00169

 > 1917.m00169, length: 1998, copies: 1 

MATLPLATGVGWVVSPVIKLMFEKVQSYISTQYKWQSNLVDDLKKLETILTEILLVVGTAERRRTLDCNQQALLR

QLKDAVYDAEDIMDEFDYMFLKANAQKRKLRSLGSSSISIAKRLVGHDKFRSKLGKMLKSLSTVKECAHMLVRVM

GVENFSSHMLPEPLQWRISSSISIGEFVVGRQKEREELVHQLLEQSDKPESRSKGARSTSLEVITIVGNGGIGKT

TLAQLIYNDKRIEDNFDMRAWVCVSHVFDKVRITKEILTTIDKSIDLTNFNFSMLQEELKNKITMKKFLLVLDDV

WYDEKVGVPINADRWRELFAPLWHGAKVIKILVTTRMGIVANTLGCATPFCLSGLESKDSWELFRRCAFSTRDPN

EHLELKSIGEHIVQKLNGSALAIKAVGGHLSSNFNYEEWNRVLKSGLSNEKDIMTILRLSYECLPEHLQQCFSFC

GLFPKGYYFEPDMLVNMWIAHEFIQDRGRTYGSLTSTGKSYFDELLSRSFFQALRYGGTVHYVMHDLMNDLAVHV

SNGKCYRVEANEPQEIFPEVQHLSILAERVDLLRACQLPSLRELHIDGMKSLECIGTSFYGDAGFPSLKTLELTE

LPELADWSSIDYAFPVLHDVLISRCPKLKELPPVFPPPVKMEVLPSTIVYTQHTDHRLDTCITQKEVSLTSLSGI

FHVCHQESVEIAEISFDGADMVNDGLRDLGPNLPSHQGPFICWYADLHRAFASLTEMKIVGCPNITSLLDFRYFP

VLKNLIIQDCPELNELQEDGHLTTLTEVLIEHCNKLVSLRSLRNLSFLSKLEIRNCLKLVALPEMFDFFSLRVMI

IHKCPEIVSLPEDGLPLTLKFLYLNGCHPLLEEQFEWQHGVEWEKYAMLPSCLFAGESIGYGQEVIYIIYRSYTR

LVRVVVACLFCCHVISSFQYEDQQKDDGPPLQNTVITDQVDLLNPGRNYGMVFYVYIGEICSEPVKISYVSLQLL

YGFLFWKGKKNLCHNTDQGISDYMAEFSAMSSVGWIVSPIIRKMVSVVQSYISSQFTWKSEMMSDLKNLESTLVQ

ILLVVGAAERRSRKDSSQVMSLHQMKDAVCEADDVLDEFDYLIKEKIEDLGMFSSVLSIGKRLVSIDKLRSKLQE

VIKTLGRVRASAEMFAQVMAGEVSSFSQSPEYAPARATGSLLREDTIFGRKNEIDELLFNTVVHSIVGVGGIGKT

TLAQAIYNDERITEIFDLKIWGLGKDDSRMLFRKCAFGNRNPEDYPELKIIEDQIVENLKGSALAIKVTGGHLSG

KYNALEWNKILQKSVLNPNDIMTILRSSYESLPNYLQQCFTYCSLFPKGYRIDPNRLIHMWAAQGFVHSDRNINT

SLEDIGRGYFNDLLQRSFFQVFRCGDQIYYIMHDVLNDLALHVSGGECHRIEHGSPSELPHHIRHLSVSAELLEN

FPHSWYTCQAEGGAGAGCMHQLPCVEGSGEFHVGKKGQSIVGLKDLNELRGELAIRLLENVKTKEEAAKANLELK

KHIRKLELEWGSGDHDGHTSNGCDVLNVLKPHPNLVELTISGYPGATSPTWLNSGWLSSLQLICLRDCKKWEVLP

PLGDLPLLKALEVRRMDELKILDQEFLGRKGFPSLERLLLERLPKLEWSIVENDQLFPALRDLSFSGCPRLREYP

TYVRTLRHIAILDKEQIHFKVFMDNFELTRSFCCLLSSFFYVLRVHHLEFVEKLKIYVDHLRDIPKVAFNNMKQL

KELTIFGLGSSWENTYPIISTLWDEDGVTVLPTSLQRLELIKCQLRASSLSKLLNNLVCLDTLDLGPCDTVGMPS

QLSLSMHQLRMLRQLNIYKCYWLMSLEGSQSLVSLKELRLENCDNLESVPDMDNMPSLQILLLRSCPQVTRLYQS

GCHTALEELRIESCDGLASLEDLNELVSLRKMKVIECSALISLPDMSTFYSLKILVIGRCTQLRALPRNGLPVSL

KAFFLIEGHPLLGKQFELKNGPDYNKVAALSGCMRHTNQSNITFYSLF

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	164	479	2.4e-66
NB-ARC [Pfam ls]	164	479	7.8e-67
NB-ARC [Pfam fs]	1156	1221	5.7e-13
NB-ARC [Pfam fs]	1223	1347	3.4e-24
LRR [Pfam ls]	1834	1856	0.44

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	565	597	3.6
LRR [sensitive, ls]	565	597	83
LRR [sensitive, ls]	616	636	3.9
LRR [sensitive, ls]	616	636	90
LRR [sensitive, ls]	728	750	1.2
LRR [sensitive, ls]	728	750	29
LRR [sensitive, ls]	751	773	4.1
LRR [sensitive, ls]	751	773	95
LRR [sensitive, ls]	774	796	0.82
LRR [sensitive, ls]	774	796	19
LRR [sensitive, ls]	820	841	0.65
LRR [sensitive, ls]	820	841	15
LRR [sensitive, ls]	1634	1657	2.7
LRR [sensitive, ls]	1634	1657	64
LRR [sensitive, ls]	1700	1723	2.2
LRR [sensitive, ls]	1700	1723	50
LRR [sensitive, ls]	1759	1783	1.2
LRR [sensitive, ls]	1759	1783	29
LRR [sensitive, ls]	1834	1856	0.019
LRR [sensitive, ls]	1834	1856	0.44
LRR [sensitive, ls]	1880	1902	1.7
LRR [sensitive, ls]	1880	1902	39
LRR [sensitive, ls]	1926	1947	1.2
LRR [sensitive, ls]	1926	1947	28

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	6	855	7e-78
Mla1 [Hordeum vulgare].	13	526	3e-28
RPM1 [A. thaliana]	71	644	2e-33
Xa1 [Oryza sativa]	156	553	7e-60
Pib [Oryza sativa].	167	550	4e-25
Pi-ta [Oryza sativa]	178	502	7e-16
RPS2 [A. thaliana]	188	618	9e-24
I2 [L. esculentum]	1041	1285	5e-17
Pi-ta [Oryza sativa]	1197	1437	3e-12
Xa1 [Oryza sativa]	1200	1418	1e-28
I2 [L. esculentum]	1218	1419	1e-29
RPM1 [A. thaliana]	1223	1394	1e-17
Mla1 [Hordeum vulgare].	1223	1394	3e-15
Pib [Oryza sativa].	1243	1420	2e-17
Xa1 [Oryza sativa]	1462	1957	4e-27
I2 [L. esculentum]	1468	1955	3e-32
Xa1 [Oryza sativa]	1572	1956	4e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	1480	1507

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1917.m00169

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)