Report for 1917.m00170

 > 1917.m00170, length: 1179, copies: 1 

MATIPLATGVGWVVSPVIKLMFEKVQSYISTQYRWQSNLDDGLKKLETILTETLLVVGTAERRRTLDFNQQALLH

QLKDAVYDAEDILDEFDYMLLKENAEKRNLRSLGSSSISIAKRLVGHDKFRSKLRKMLKSLSRVKECADMLVRVI

GPENCSSHMLPEPLQWRITSSFSLGEFVVGRQKERDELVNQLLEQVGIPKSRSEGARPTSSEVITIVGTGGIGKT

TLAQLIYNDKRIEDNYDLRAWICVSHVFDKVRITKEILTSIDKTIDLTNFNFSMLQEELKNKVKMKKFLLVLDDV

WYDEKVGGSINADRWRELFAPLWHGVKGVKILVTTRMDIVANTLGCTTPFPLSGLESEDSWELFRRCAFNTRDPK

EHLELKSIGEHIVQRLNGSALAIKAVGGHLSSNFNNQEWNRVLNKGLSNEKDIMTILRLSYECLPEHLQQCFSFC

GLFPKGYYFEPDVLVNMWIAHEFIQDGRHTYGSLKSTGRSYFDELLSRSFFQALQYGGTVHYVMHDLMNDLAVHT

SNGECYRLDVDEPEEIPPAVRHLSILAERVDLLCVCKLQRLRTLIIWNKVRCFCPRVCVDADLFKELKGLRLLDL

TGCCLRHSPDLNHMIHLRCLTLPNTNHPLSDSLCSLHHLRMLSVHPHSCFMDTRPIIFPKNLDNLSCIFHIDVHK

DLFVDLASVGNMPYLWAAGKFCVGNTKMQGLEVLKDMNELQGFLTITSLENVKNKDEATNAQLVNKSQISRLKLQ

WGSCNADSKSDEQNVLNSLIPHPGLEELTVDGYPGCSSPSWLESEWLSRLRHISIHNCTCWKFLPPLGQIPSLKK

LHIDRMDALECIDTSFYGIAGFPSLETLELTQLPELVYWSSVDYAFPVLRDVFISCPKLKELPLVFPPPVEMKVL

SSNIVCTQHTDHRLDTCIIQKVSLTSLVGIFHLWHLDSEEIADTSFDRANMLNNGLRDSSPNLPSLEGPFIGWCS

DFHHAFVRLNEMEIVDCPNVTSLVDFGCFPALQNLIIRDCPKLKELPDNGNLTTLTKVLIESCYGLVSLRSLRNL

SFLSKLEIKHCLKLVALPEMVNFFSLRVMIIQDCPELVCLPEDGLPMTLNFLYLSGCHPLLEEQFEWQHGVEWEK

YAVLPSCFYAGKSMEDTEDIADEILLENDMIEWSTQTSLLHPTDSAASSSSFLQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	164	479	3.2e-70
NB-ARC [Pfam fs]	213	479	8.8e-70
LRR [Pfam ls]	594	615	4.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	594	615	0.19
LRR [sensitive, ls]	594	615	4.4
LRR [sensitive, ls]	799	827	1.2
LRR [sensitive, ls]	799	827	29
LRR [sensitive, ls]	983	1005	2.2
LRR [sensitive, ls]	983	1005	50
LRR [sensitive, ls]	1006	1028	0.68
LRR [sensitive, ls]	1006	1028	16
LRR [sensitive, ls]	1029	1051	2.9
LRR [sensitive, ls]	1029	1051	68
LRR [sensitive, ls]	1075	1096	0.77
LRR [sensitive, ls]	1075	1096	18

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	4	1117	1e-113
Mla1 [Hordeum vulgare].	13	626	2e-32
RPM1 [A. thaliana]	71	625	2e-37
Pi-ta [Oryza sativa]	76	724	6e-17
Xa1 [Oryza sativa]	169	889	7e-85
Pib [Oryza sativa].	178	644	2e-27
M [L. usitatissimum]	186	1110	3e-11
N [N. glutinosa]	213	641	1e-10
RPS2 [A. thaliana]	213	888	3e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1917.m00170

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)