Report for 1917.m00172

 > 1917.m00172, length: 1317, copies: 1 

MATLSLATGVGWVVSPVIKLMVEKVQSYISTQYKWQSNLEDDLKKLETILTEILLVVGTAERRRTLDCNQQTLLH

QLKDAVYDAEDILDEFDYMLLKENAEKRNLRSLGSSSISIAKRLVGHDKFRSKLRKMLKSLIRVKECAEMLVRVI

GPENSSSHMLPEPLQWRITSSFSIDEFVVGRQKERDELVNRLLEQADIPKSRTEGAISVSPEVITIVGTGGIGKT

TLTQLIYNDKRIENNYDMRAWICVSHVFDKVRITKEILTSIDKTIDLTNFNFSMLQEELKNKVKMKKFLLVLDDV

WYDEKVGGPINADRWRELFAPLRHGVKGVKILVTTRMDIVANTLGCTTPFSLSGLESEDSWELFRRCAFSTRDPN

EHQEMKSIGECIVQKLNGSALAIKAVAGHLSLNFNYDEWNRVLKNGLSNEKDIMTILRLSYECLPEHLQQCFSFC

GLFPKGYYFEPGILVNMWIAHEFIQDHGHTYGSLRSTGRSYFDELFSRSFFQALQYGGTVHYVMHDLMNDLAFHT

SNGECYRLDVDEPEEIPPAVRHLSILAERIDLLCTCKLQRLRTLIIWNKDRCFCPRVCVEANFFKEFKSLRLLDL

TGCCLRHSPDLNHMIHLRCLILPYTNHPLPESLCSLYHLQMLSVHPHSCFMDTGPVIFPKNLDNLSSIFYIDIHT

DLLVDLASAGNIPFLRAVGEFCVEKAKVQGLEILKDMNELQEFLVISSLENVNNKDEAANAQLANKSQISRLKLQ

WDSSNADSKSDKEYDVFNALRPHPGLKELTVDGYPGYKSPSWLEFNWLSRLEHINIHDCTCWKLLPPLGQLPCLK

ELHIDTMNALECIDTSFYGDVGFPSLETLQLTQLPELADWCSVDYAFPVLQVVFIRRCPKLKELPPVFPPPVKLK

VLESIICMWHTDHRLDTCVTREISLTGLLDLRLHYLESMESADISFDGAGISNDGLRDRRHNLPKGPYIPGFSDS

PSTFLRITGMEFISCPNLTLLPDFGCFPALQNLIINNCPELKELPEDGNLTTLTQVLIEHCNKLVSLRSLKNLSF

LTKLEIRNCLKLVVLPEMVDFFSLRVMIIHNCPELVSLPEDGLPLTLNFLYLSGCHPLLEEQFEWQHGIEWEKYA

MLPSCFYADKSMEDTEDIAEEVLRENDMIEWSIQTSLLHPTDSAASSSSFLQLPAAKYNAQVNLMIPVILCKLHD

MDDFCSLRFLKIDQCRQLRSLPWSGLLVSLETFILFGCHQALEEQFQRKEGPDWDKKRGRDPGAQWHSSQSNRIV

RIPGRRSGCGQSFRRAGRKAHTSPGEEGKPRGLSRSAVQQRR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	164	479	1.3e-69
NB-ARC [Pfam ls]	164	479	3.7e-70
LRR [Pfam ls]	594	615	1.6
LRR [Pfam ls]	1073	1094	6.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	594	615	0.071
LRR [sensitive, ls]	594	615	1.6
LRR [sensitive, ls]	800	822	1
LRR [sensitive, ls]	800	822	23
LRR [sensitive, ls]	874	894	2
LRR [sensitive, ls]	874	894	46
LRR [sensitive, ls]	1004	1026	0.4
LRR [sensitive, ls]	1004	1026	9.4
LRR [sensitive, ls]	1027	1049	1.3
LRR [sensitive, ls]	1027	1049	30
LRR [sensitive, ls]	1073	1094	0.26
LRR [sensitive, ls]	1073	1094	6.1
LRR [sensitive, ls]	1206	1227	1.4
LRR [sensitive, ls]	1206	1227	33

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	13	673	7e-35
I2 [L. esculentum]	43	1238	1e-117
RPM1 [A. thaliana]	71	905	5e-38
Pi-ta [Oryza sativa]	76	642	6e-17
Xa1 [Oryza sativa]	138	1102	3e-88
Pib [Oryza sativa].	167	671	2e-25
RPS2 [A. thaliana]	213	890	4e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1917.m00172

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)