Report for 1926.m00124

 > 1926.m00124, length: 2101, copies: 1 

MVGFGEIIASAVIKELSGKLGSPIWNTIMSQVTFRDDLEAIKSMLSSLQAKLNDAERKSQTDGSVRDLLKKLKAV

AYDIEDRLAVYESSSNDGHDGSLRHEWSSFPEKLKSRYNLPREMKKMRRRLEGIKKEMDLTSFKVDGATEEQDSY

ISRHLEPRRYSSEDTVGRIAEKGRIMDLLLSDEEHSIIPIYGLGGLGKTTLAQMAFSDCTTQIAFEMLAWVYVSE

KFDLNAISLSIKQQCNSHTLQYGDSGIHNVAVESILTEKRCLIVLDDLWEENNFKLDELEAMLRLCKKGSKVIVT

TRSKKVADRMNKDLQIELGLLPNEDCWTLFRKKARVPTPVPPYVEAMRETIVEKCQVFPKGSHIQKSSLIQQWIA

LGFIQPPESIPTEQYAEYCLQELIEMSFLQNVNAATAMSARYTEPQNVLKMHDIVHDLASVIAADEVCIFHASDC

SSSNTKNCCRYMYLLNLSEFSRDPILPNTARALHFKDCRKSPKNYSETKFLRILDFSACTINELPDSISHLSLLK

YLNVSGLSGTLPKSLSKLHHLQALTLSTNIDLVELPSYICCSKLQNFLKLIPRWKFGTLEYLNISGVGAKSDSEA

PGTSAEDQSSQDPIKELELGMLQEDIITQGLFRLKYLSIGGFTLYSEQGIARMVDLLTLPNFNVRLQDDGRCSNI

LILQQILDVTHRQLNIKCLENVVFSEEAKQLELDRMRQFHSLGFEWSLSGMVSSVKQRAVLGNLRPHRNLQSLSI

KGYICTEFPDWINKINDTLPDLVKLVFSDINGCNYIPISQLPNLKELEINNMPRLNKIYGTLPNLVKLILSHIER

CDHIPVLGNLPNLQELEIYNMPQLHDARIGPCNKLRRLTLVGLPNEATVHLFYDICTHTEVQMVESSHGCDEEMT

ETGQEFNTLPGCSFRKNEVRRSEELSRGPSTEKGKVKNWFDALLLSIGGARAKKTLASALSHISLVPEESQLSPK

LSHGCLEVTSAALPELDYLQIGSCHDLKLHPTPPKSKEYFVKDSSLSLPVDKEDTSSFPSRPYDQYTEGCSHSGQ

GTAIPPHEHAMQKSIPRLKSKLHIEGSRDQLRQWTELLSTHLDELTITDPLFYNSKYLEEESTVSEHDSLESIYG

LPQSCIANLEKINLPPSHQYGLEECSNYDNIVDFVGRIDSQVPYINIGKVGTFSVKPIEEGGIFCSSNIPLLYKH

YDGQSSSLVIKNLENLKGSLGEVQELAKYQQVRLVWSRSNFIEDSSMAEDKAVLQKLRPHHDLETIEIEGYRGDE

FCYWMMNINSSLPNLVTVKLSNIANCQCLPPLGQLANLEVLHISDMPSVRKVDGHVYGTEKPFRKLRELELSTMK

NLEEWLTTTLLLTGHNDHQLSRSEEVFPNLQVLLIANCPRMRFVPGFPRSRECTLEKSYSILLSFEQFIGSSNLA

LIALKINDSGSSSDIVKFLQGCVNLLYLTIDSCIDLITLPEPIKNCHCLRKLEITNCWNFSVLPEWLGELTFLQK

LDIQASKLEYLPQSIQRLTALERLVLNKCNYKLRERCTSREDKEKIKHIKTIDMNEVPLMYLTPSYIMLLQQVTS

SQFIDLHIGGLECMIGLREMENLELQTKKELSSLSLEWSYAYADSSDKYASSERGMQNRAVFEKLQPHDSLEILC

IKNYAGVDFPRWMSLLPNLVQLKIVGMQFEYLHLDQFQNLKELFLSRVQFAHLHLNGLQNLIELSLSGLKFGHLH

IDQLQNLRELKVSGVEFQHLHLERLQNITELKLSEERFERLHIDQLQNLKELKFSSVEFGHLHLERLQSITKLEL

CKKQFEHLHLVQLENLRQLYLFTVKFECVVLHQLQNLEELHLSQIESQKSNKPVCIECSQPLRKLQKIVMTKIIN

KGLQISVQGGEGDKNLFPGLQHLEMELCENLRFQPSIPRSTHYIISGEIYFDKFNYRRILGSFLFPSFKQVMGTS

IPGSTSRMEIKNTSGLSSERWKSIPHLELLNITELTIDKCVDSCPVPKCILGWKSLQKLEIRRCEDIELLPEWLG

EMSCLTELIVETYWMEALHPCIRRLTNLQSLTLITCLNRFKERCKSGDDWINIKHIPHIQITDRNGRTEIISPSC

T

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	150	356	1.6e-41
NB-ARC [Pfam ls]	150	455	1.5e-21
LRR [Pfam ls]	500	522	1.9
LRR [Pfam ls]	1473	1496	1.4
LRR [Pfam ls]	1710	1733	6.8

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	500	522	0.08
LRR [sensitive, ls]	500	522	1.9
LRR [sensitive, ls]	545	568	1.5
LRR [sensitive, ls]	545	568	35
LRR [sensitive, ls]	793	813	4.5
LRR [sensitive, ls]	793	813	110
LRR [sensitive, ls]	814	836	1.5
LRR [sensitive, ls]	814	836	36
LRR [sensitive, ls]	837	861	0.81
LRR [sensitive, ls]	837	861	19
LRR [sensitive, ls]	1289	1311	3.6
LRR [sensitive, ls]	1289	1311	84
LRR [sensitive, ls]	1312	1336	4.8
LRR [sensitive, ls]	1312	1336	110
LRR [sensitive, ls]	1379	1401	2.1
LRR [sensitive, ls]	1379	1401	50
LRR [sensitive, ls]	1449	1472	1.9
LRR [sensitive, ls]	1449	1472	44
LRR [sensitive, ls]	1473	1496	0.061
LRR [sensitive, ls]	1473	1496	1.4
LRR [sensitive, ls]	1497	1519	0.32
LRR [sensitive, ls]	1497	1519	7.6
LRR [sensitive, ls]	1668	1691	1.2
LRR [sensitive, ls]	1668	1691	27
LRR [sensitive, ls]	1710	1733	0.29
LRR [sensitive, ls]	1710	1733	6.8
LRR [sensitive, ls]	1741	1767	3.9
LRR [sensitive, ls]	1741	1767	92
LRR [sensitive, ls]	2005	2028	0.56
LRR [sensitive, ls]	2005	2028	13

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	8	846	7e-19
I2 [L. esculentum]	38	849	2e-36
Pib [Oryza sativa].	48	307	2e-15
Xa1 [Oryza sativa]	94	849	1e-29
RPS2 [A. thaliana]	158	850	7e-19
Mla1 [Hordeum vulgare].	357	591	4e-11
I2 [L. esculentum]	1207	1719	5e-18
Xa1 [Oryza sativa]	1245	2079	9e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	35	61

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1926.m00124

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)