Report for 1930.m00162

 > 1930.m00162, length: 864, copies: 1 

MEGRWVVVFWVLVVMCRGACGLNADGVLLLSFKYAVTADPLGALAGWGYADESPCAWNGVVCNGFPQADAAAAWT

ANVTGVAAAEGGNSSAAVPVPSNGTAAAAAGLGVNASLAAAATVSRVISLVLPNAQLSGSLPPELGRVEHLRHLD

LSGNSLNGSLPPTLLNATELRVLSLADNDISGVLPDGGSVPYSRSLQELNLSNNALAGRLPPALCRLPSLAVLGL

ANNYLAGELPIGGLAALEVVDLSANYFNGSLPSDFGGSRLRFLNISSNKLTGALPTELSAVVPANSTVDLSHNNF

TGTVPQAGPFAVQPAAAYEGNPELCGPPLKKMCSIPSSLSNPPNATDSPPAFAAIPKNPTRPSPGAQAQAPRGQE

KLRPAAILAIVAGDLAGVGLLFMLFLYIYHIRKKRRQRRHHHHQQQQDSPLQHKSNRAIGDVKTLDIAGAREEKA

STSDESSDCSASSGAETSDDDDDGDLKKRSMSFIGRSTPQHHSKKHDHPHHQAAAAPPAPATLVTVDGDGELEME

TLLKASAYILGATGSSIVYKAVLADGTALAVRRIGESGGADKLKDFEAQVRAVARFRHPNILRLRGFYWGADEKL

LIHDYATNGSLANIAFSRRFGASSPLQLSLEARLRIARGVARGLAFIHEKKGVHGNVKPSNILLGADMEPWIGDF

GLDRLLSGEAVHRSTGASARLFGSKRSMHSTSSLPDLSQMPGAGASPCGSSSAATSAAAAAAPPPYQAPECLKNL

RPNTKWDVYSFGMVLLELLSGRVYSEVELCQWHAGFVVEERSRLLRMADPTLRGEADGREDALLACFKLAFACCA

MAPGKRPAMRDAVLVLDRIPCSSSSASTTTTTTAAAAIP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	145	168	0.0093
LRR [Pfam ls]	169	191	4.9
LRR [Pfam ls]	195	218	0.0025
LRR [Pfam ls]	264	288	0.54
Ser/Thr pkinase [Pfam ls]	533	841	3.8e-14
Ser/Thr pkinase [Pfam fs]	575	677	1.3e-16
Ser/Thr pkinase [Pfam fs]	739	771	0.0039

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	121	144	4.7
LRR [sensitive, ls]	121	144	110
LRR [sensitive, ls]	145	168	0.0004
LRR [sensitive, ls]	145	168	0.0093
LRR [sensitive, ls]	169	191	0.21
LRR [sensitive, ls]	169	191	4.9
LRR [sensitive, ls]	195	218	0.00011
LRR [sensitive, ls]	195	218	0.0025
LRR [sensitive, ls]	219	243	0.5
LRR [sensitive, ls]	219	243	12
LRR [sensitive, ls]	264	288	0.023
LRR [sensitive, ls]	264	288	0.54

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	25	283	1e-20
FLS2 [A.thaliana]	29	306	3e-21
FLS2 [A.thaliana]	84	306	1e-19
CLV2 [A. thaliana]	113	305	2e-16
FLS2 [A.thaliana]	114	304	3e-19
Xa21 [O. sativa]	114	306	4e-18
Cf-9 [L. pimpinellifolium]	115	349	5e-21
FLS2 [A.thaliana]	120	306	2e-19
CLV2 [A. thaliana]	121	344	1e-14
Cf-9 [L. pimpinellifolium]	122	307	6e-14
CLV2 [A. thaliana]	124	305	5e-17
Cf-9 [L. pimpinellifolium]	125	305	4e-15
FLS2 [A.thaliana]	125	341	4e-23
Xa21 [O. sativa]	125	326	5e-20
CLV2 [A. thaliana]	132	305	2e-21
FLS2 [A.thaliana]	132	305	5e-19
Cf-9 [L. pimpinellifolium]	144	306	4e-12
FLS2 [A.thaliana]	521	850	8e-20
Pto [L. esculentum]	521	842	3e-20
Rpg1 [Hordeum vulgare]	522	772	1e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	29	in -> out
putative TM domain	7	29	in -> out
putative TM domain	382	404	out -> in
putative TM domain	382	404	out -> in

Report for 1930.m00162

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)