Report for 1932.m00170

 > 1932.m00170, length: 883, copies: 2 

MDAVETIISTGINIYEATQLSDELSRLQATLPKARFLINRGEWGRFKNKDMAILLSQLKDTTYDAEDLLREFDDQ

ALRQKMEDADRSWAEGAINSVGLSIEAVQHMPETSSVIDVSQVFGRDKERDLVIEKLGVRSMIGRNSQRDQVIEL

LGVPLTRGAAARAKEKRAAATVTGTKSASCRTKKLKGESSRAPRLDEAKCIGNVSVLPIFSIGGVGKSTLAQFIY

NDPRVQAHFGKRRVWVCVSDLFDKRRITKEIIESFTKEEYKPLFSLDALQVEMMEQLGRRKFLLVLDDIWQEAID

EWESFYAPFKNGPKGSMILVTTRFTTVADRVATNNCKPIQLEGLDRDIFWEFFSKCSFGEERPESYPQLQDIGHN

IASRLCGSPLAAKTIGRLLNMELTVQHWETVRNSELWELPHRENEILPALQLSYLYLPQELKRCFAFCCMFPKDY

SFERDEIVDIWVAEGFVVSSGSTRLEDMGIRSRNERRMLYAVRHMSVEVADESLKSGMRGIQDLNKLHSLRFGIN

FNVEITWFNQLSNILYLSLKGCTVVKLPESIGELNSLRYLDISYSGCSPKLSEISRLGNLSRLRNLQYFIVETGD

GRKIGELRGMNQLSVALLISSICNVKNEEEAAEASLVEKRYLQNLVLQWRKKVTSLVKSSENGVLEALHPPPRIE

HLTVQGFGGDSFSPSWFRLESLLTLRSLVLFHCGVLKNLSIPSFPSLELLMLSGNIWLKTVTILGGSTGGETMQH

ASSSSSSSNGTTCLSGLTYIGLYSCEDLQNLDRCLSPEYLPSIKSIEIDSSSDLGLSMPVDSFVGFKYLQDLKIH

CKLLCPQGMVLPPSLRRLSIVSGRKVDFPACLQSLTSLNILHLSSCDGMESIPLGTNL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	162	472	4.8e-59
NB-ARC [Pfam fs]	213	472	8.9e-64
LRR [Pfam ls]	561	586	7.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	538	560	0.55
LRR [sensitive, ls]	538	560	13
LRR [sensitive, ls]	561	586	0.32
LRR [sensitive, ls]	561	586	7.4
LRR [sensitive, ls]	699	723	0.62
LRR [sensitive, ls]	699	723	15
LRR [sensitive, ls]	766	786	3.7
LRR [sensitive, ls]	766	786	86
LRR [sensitive, ls]	792	817	3.1
LRR [sensitive, ls]	792	817	73
LRR [sensitive, ls]	862	882	2.6
LRR [sensitive, ls]	862	882	59

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	24	737	1e-72
Pi-ta [Oryza sativa]	57	478	2e-13
Mla1 [Hordeum vulgare].	181	467	5e-20
M [L. usitatissimum]	203	567	9e-12
Pib [Oryza sativa].	204	593	1e-20
Xa1 [Oryza sativa]	204	479	8e-57
RPM1 [A. thaliana]	206	492	5e-27
RPS2 [A. thaliana]	206	798	3e-21
Xa1 [Oryza sativa]	549	879	1e-10

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1932.m00170

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)