Report for 1932.m00172

 > 1932.m00172, length: 1091, copies: 2 

MDAVETIISTGINIHEATQLSNELSRLQATLPKARFLINRGEWGRFKNKDMALLLSQLKDTTYDAEDLLRESDDQ

ALRQKMEDADRNWFGKRYSSILNLAKILIRGSKTKIKEAREKLDKAVADLEGVLNSVGVSIEAVQHMPETSSVIC

VSQVFGRDKERDLVIEKLGVCSMIGCDSQRDHVIELLGVPLITRSGVARARAKGKRAAAPVIGNTSASSRAKQLK

RDTRARPRLAEAKCIDNVPVLPIFGIGGVGKTTLAQFIYNDPRVQAHFGNRRVWVCVSDLFDKKRVTNEIIESFN

REEYKPLCGLDALQVELMEQLERQKFLLVLDDIWQEAIDEWESFYTPFKNGPKGSMILVTTRFTTVVDRVATNNC

KPIQLEGLDRDIFWEFFSKCAFGEECPESYPQLQDIGRSIASRLCGSPLVAKTTGRLLNMKLTVQHWETVQNSEL

WELPHRDNEILPALQLSYLYLPQELKRCFAFCSMFPKDYSFERDEIVDIWVAEGFVASGGIMRLEDMGIRYLDDL

RSRFLFQTDPMYPDQTRYVMHDLIHDMAQSVYVDECLLMQDLRSRNERRMLHVVRHMSVKVADESLKNGMRGIQD

LNKLHSLRFGIKLNVEITWFNQLSNILYLSLKGCKLVKLPESIGELNSLRYLDISRSGVQELPKKFCSLYSLQVV

DASRSSLKAISLDVIKLINLRRLALPNDKEAAEASLVEKQYLQELVLLWRGHGKEIGKSSENGVVEALRPPPRIV

RLKVQGFGGDSFSPSWFRPECLLNLRSLELSKCDGLKNLSIASLPSLERLMLEANLRMEAVTILGGSTGGEKTKH

TSSSSSNCTACLRGLTTIRLVNCYQLQNLDGCLSPEYLPSIECTEINKSSHLGLSIHVDSFVGFEHLQEMKIWRC

KLVCPQGMVLPPSLRRLSIVNCRKLDFPAYLQSLTSLDILHFRACNNMESIPLGTNLRVKCLILKSCSELSSIGG

SRALSSMQVVSISDGPKLHEVEQPFTKGLLTKEEKVELLKFTGSMYYLNPLCPMSGNGDGWSMGERGSDRDDEVV

LAAAAAGAWVTMAAAVCGVEVVMESSEPAIWRQRQGLWRLQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	201	511	9.6e-64
NB-ARC [Pfam fs]	241	511	3.2e-67
LRR [Pfam ls]	625	647	4.4
LRR [Pfam ls]	648	670	0.61
LRR [Pfam ls]	774	798	4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	625	647	0.19
LRR [sensitive, ls]	625	647	4.4
LRR [sensitive, ls]	648	670	0.026
LRR [sensitive, ls]	648	670	0.61
LRR [sensitive, ls]	671	694	1.1
LRR [sensitive, ls]	671	694	25
LRR [sensitive, ls]	774	798	0.17
LRR [sensitive, ls]	774	798	4
LRR [sensitive, ls]	839	859	3.6
LRR [sensitive, ls]	839	859	83
LRR [sensitive, ls]	913	935	2.4
LRR [sensitive, ls]	913	935	56
LRR [sensitive, ls]	936	958	3.2
LRR [sensitive, ls]	936	958	74

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	105	871	6e-30
Xa1 [Oryza sativa]	211	985	1e-75
I2 [L. esculentum]	234	812	1e-82
L6 [L. usitatissimum]	241	649	7e-12
M [L. usitatissimum]	242	940	1e-12
Pib [Oryza sativa].	243	681	3e-29
RPM1 [A. thaliana]	245	947	4e-42
Pi-ta [Oryza sativa]	245	700	1e-20
Mla1 [Hordeum vulgare].	248	698	8e-28

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	105	131

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1932.m00172

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)