Report for 1936.m00113

 > 1936.m00113, length: 663, copies: 1 

MPLHSHLLLLLLALSTSVVAGSVSSSPSVCAGGGGGGGDAAIVAAAFRGVRNFQLPPCGAVRELRLPSRNLTGAV

AWAALANLSGLAVLDLSGNALQGAIPGGFWRAPSLRHVDVSGNQLGGALRVVEASPRLESLNVSGNRFTGVAGAE

ALAGLRVLDVSANRIRAVPQGLRRLARVNRLDLSRNAMQGRFPGDLPPLAGLRFLNVSYNNFSGVVDGGAVKKFG

HSAFVHSGNTSLVFSENSTARRPPPPPSPPPSHPHRSGGKNDTATPARRTRTRSRRKHLSVVTVAVVCGVVSVAM

LLCLVGCVACGVLRCRKNRGKEAEEEKRKAHWGGKDEEEVVAVAAAAAKGGSAAPVVLFERPLMELTLADLAEAT

SGFGRESQLAERGGRSGAAYRAVLPGDMHVVVRVVDGAMAVGEDDDPATAATAFRDLARLRHPNILPLLGYCIAG

KEKLLLYEYMEKGDLHRWLHELPAGRPDMEDDTGGDIWEVAEDKRSISDWPTRHRIALGIARGLAFLHQGWAGSG

RPVVHGHLVPTNILLGEDLEPRISDFGHPSDTTPEGDVYSFGVLVLELITGQAGWDEASVSWARGIIRDQKGLDI

VDPRVRDEAGGGPETSTVEREMVECLRVGYLCTAQSPEKRPTMQQVVGVLKDIRVAPASSSST

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	85	108	0.37
LRR [Pfam ls]	132	153	5
LRR [Pfam ls]	154	176	1.6
LRR [Pfam ls]	201	225	4.8
Ser/Thr pkinase [Pfam ls]	378	647	6.7e-11
Ser/Thr pkinase [Pfam fs]	432	552	1.7e-12
Ser/Thr pkinase [Pfam fs]	558	576	0.11

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	60	84	4.3
LRR [sensitive, ls]	60	84	100
LRR [sensitive, ls]	85	108	0.016
LRR [sensitive, ls]	85	108	0.37
LRR [sensitive, ls]	109	131	0.8
LRR [sensitive, ls]	109	131	19
LRR [sensitive, ls]	132	153	0.22
LRR [sensitive, ls]	132	153	5
LRR [sensitive, ls]	154	176	0.07
LRR [sensitive, ls]	154	176	1.6
LRR [sensitive, ls]	177	200	0.45
LRR [sensitive, ls]	177	200	10
LRR [sensitive, ls]	201	225	0.21
LRR [sensitive, ls]	201	225	4.8

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	70	470	3e-14
FLS2 [A.thaliana]	71	654	6e-28
Rpg1 [Hordeum vulgare]	284	660	3e-17
Pto [L. esculentum]	368	651	3e-17
Rpg1 [Hordeum vulgare]	389	659	5e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	286	308	out -> in
putative TM domain	286	308	out -> in

Report for 1936.m00113

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)