Report for 1937.m00148

 > 1937.m00148, length: 1217, copies: 1 

MGTELTVTGWFLSPIIREMQDTALSYIRGQFSWEKDQEKDLERLDTILTEILAIVDAIEKREIKDGNQRKLLRKL

KDAIYSAVDVLDSFQYMALKSKVDSQAMVSRVTSSCVYLGKRVVGTDKFRRKLTDMLKKLDEVKTTADTLFKLVS

FDSATAKLLPVTQARVTSPLKEENHIYGRKDDLDRLRDLLLMQSDSSAPGPSNSCVPVISIIGVGGIGKTSLAQL

AFRDERIRASFGLRIWVCVSDIYDEITLARDILESVTGENYRSVTKLDELKNVLQEKISQKNFFLVLDDVWYDEN

RTNWENELVWDGVLSTLDTGLGGSKILVTTRTNKASELLRAGACLQLGGLNRDDYWMLFKSCAFGEKHPGLFQEL

KEIGMQIAERLNGLPLAAKVIGRLLNVDLDSSHWKKVLESDISGDVMKVLRLSYQHLPIHLQLCFSFCSLFPKNW

RFDPRRLTDMWISQGFVQKEDESDNDMNVEDVAKGYFNDLVQRSFFERSLLDLPIEYVMHDLINDLARNVSKDEY

TRIESEKQKEIPPNIRHLSISAHLWAGMKKTEMKNLRTLLVWSKSWPCWKLSLPNDVFKKSKYIRVLDLTGCCLE

RLPTSVKNLKHLRYLAFRVPEKPLPTALVQLYHLEVLVTRGHSCRGSECFQLPTNMKKNLLKLRKAYLFNVGGAT

ISGFGGQTLLHGPGEFHVKKESGHRLGELKEMNNIRGRLSVRFLENVEHQQQAVDAHLDCKEHVKHLQLEWSDLP

RPITSELDSDVLEALRPHPDLDRLNITGYKGLRSPTWFETNWMKALTSVILENCMGWVQLPPLGQLPLLEDLVLR

NMHAVGQIGEEFYGNGEMKGFPKLEEIVFDGMPNWEKWSGIEDGSLLPCLTRLYIAKCPKLQEAPPLNARPKVEV

AITSDSLPSSCLFDSLMASASYLILLVNCCSFLSSLNTDQLSHVEELNVKSCTDPMPACGFIGLSSLKVLRISNC

SALLSSVCVEAGEELDTCFFPQSLSELEIVDSNIQSSLLPRYLQGLTNLSVLVINSCDSMDLLSLAYGTHHLTSL

EAIIIKDCIFLSSLDGFENLIALRKLVVADCKNFCFLPADLNALISLKTLAIYGCPKMKFLPQNGVPASLQLILL

SLLHPELDRQLQRREGTEWDKIAHVPEKKLEFFLTSVVIFGRVVCLPEPLYYIYFNRITTSHILLVLFNLPVSAS

LFDPEILEFPSMKPKNC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	160	472	1.3e-44
NB-ARC [Pfam ls]	160	472	4.4e-44
LRR [Pfam ls]	588	610	0.62
LRR [Pfam ls]	998	1022	7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	588	610	0.026
LRR [sensitive, ls]	588	610	0.62
LRR [sensitive, ls]	738	766	2.5
LRR [sensitive, ls]	738	766	58
LRR [sensitive, ls]	874	896	1.5
LRR [sensitive, ls]	874	896	34
LRR [sensitive, ls]	966	991	2.8
LRR [sensitive, ls]	966	991	65
LRR [sensitive, ls]	998	1022	0.3
LRR [sensitive, ls]	998	1022	7
LRR [sensitive, ls]	1049	1071	2.9
LRR [sensitive, ls]	1049	1071	67
LRR [sensitive, ls]	1096	1117	5
LRR [sensitive, ls]	1096	1117	120

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	5	1081	1e-117
Mla1 [Hordeum vulgare].	30	637	2e-33
RPS2 [A. thaliana]	36	891	7e-18
RPM1 [A. thaliana]	44	890	1e-41
Xa1 [Oryza sativa]	131	1094	1e-102
N [N. glutinosa]	139	636	1e-11
Pib [Oryza sativa].	161	675	7e-32
RPP5 [A. thaliana]	208	1112	4e-12
Pi-ta [Oryza sativa]	208	615	5e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	125	145

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1937.m00148

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)