Report for 1942.m00223

 > 1942.m00223, length: 1449, copies: 4 

MKQLKPEDEQKILGYAAQREGAGIEQALACWLAVASGAQTWTISNEANRCRCRHPVQCQGGLSFIRVKPGIVDDR

SSDILRSPAAQSPAPGGRSSDGVGGRERGAAGGQQGAEPAVRRVRGGVGGQQGARPQRRRRQDGAAVRAGDARQR

PWHRRQGGPQPRAEAAAPGAAWPRPRRVDAEDVLDELDYFRIQDELDGTCEAADEHAKGCVVHNLFLNTRHTALS

VASNLVLLPCAGDDHPDADGRRSGEDKNRQIGSSCAGGGQVMNRQIGSSPSRTLHAAADEEAVASNCCMHKLSPS

ARGNTHHIGSQFLRCTCSCGRVLQREDTMKTPKLKFDRVDLSQRMKRIVEQLKPLCAKVSTILNLELLESNRSIG

QYIAMSLNAEFSKKPGHAPVLPSGGIGKTTLAQYIYKEVHNYFDVTVWVCVTPNFNVYRLKEDIAKSIPQLKDEK

NSGPHDLIVQSLGSKFLLVLDDMWNCGHEDEWKYLLASLKKGQTKGNIILVTTHFLAVVEMVKTIDSPIQLKGLD

PQEFWELFKASVFGDEKSANDHANLLETGKMISKKSEGFPFGSENSWEDQNKKIEDIGLSRLNDLVSYGFFEKHV

EDGSSYYVMHDLLHELALKVSSYECLTICSSNVKSIQILPSIRHLSIVVDDMDVNDRVTFENIKKDFITLKLSLP

NIISRFYHLRILDVRQCKGHFGLPRDMNNLVKLRHFVVQDDKLYSDIANVGKIKCLQELRRFEVKRQVKAFALSQ

IGQLDELKGSLGIYDLENAKAAEEAKLLNKSHLHKLILDWNVNHSTKDYSQEEHILENLRPHSNLRELHIQGHGG

TTCPSWLGPNLSIKGLQSLCINGVCWDKFPPLGGLWLVNKHGEKFLACASGRSFQYLKRLELVAIPRLAKWAGND

ACCVLSLLEEFIVRECPELIELPFSHSTCPWSRQEMNLSQFSRLQNLEIAKCPKLLPLSPLPWTSSPCHVLIKEV

GSHFHLLDYQRNNQSEQGLQIEGKDGPLDSTFWKLLALSNLTELRELKMKKCPPLPLKHLKLLSALRRLSITDSG

IALLPTDCESTVTYHFLVEQLEIYECSASGIEMTQLLSYFPKLMNLRIEKCQKITGLGVAGQEMMATLASPPSLS

YNKSEDAQIGNDQQQPRGDNGIASVVTGLLLLPHQLQNLDIRHCSKLILQLDSFVGDTTRNLIRGVGGGLQYLRS

LQSLCIKHCPNFLSSYSPSLSCFPFPSSLQDLAIIDCVRGMETLVQNLSSLTRLSIWDFGDLRSGSMCSLLTQGH

LRVLAVHKTPEFFVGSKPSGLQQLYMDDIVGVFVEPTCRLLSSSLTKLSLSMNHKVERFTKEQNMALQLLSSLEV

LIFVQCSKLQSLPAGLHRLTSLKRLEIAYCPNIHSLPKGCFPSSLEVLHVYESQSEELKRQCRKLKGTIAIIEDE

DYLELVTNTHLFDLAQFTFCLAQH

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	358	637	3.1e-09
NB-ARC [Pfam fs]	399	565	2.8e-18
LRR [Pfam ls]	1347	1370	7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	1160	1188	2
LRR [sensitive, ls]	1160	1188	46
LRR [sensitive, ls]	1347	1370	0.3
LRR [sensitive, ls]	1347	1370	7
LRR [sensitive, ls]	1371	1395	0.4
LRR [sensitive, ls]	1371	1395	9.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	179	569	7e-21
I2 [L. esculentum]	388	565	4e-16
I2 [L. esculentum]	660	1325	8e-29
Xa1 [Oryza sativa]	673	1409	4e-36
Xa1 [Oryza sativa]	1011	1421	4e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1942.m00223

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)