Report for 1946.m00188

 > 1946.m00188, length: 1612, copies: 1 

MESVAVEAARWMVGKALSPLSGGLVEAWLACSELGTNVGAVKLELLYAQVMLDNARGRETRSPALKQLLLQLRGL

AYDAEDVLDELDYFRIQDELDGTDEAADEHTRGCLHGLLLNTRHTARNIKKRYLSACCSGGGDEKAVAGSDLSLA

GEHDADDDCTDEDDNDTGSTDIDHSSTATHMPRKEKQWGSQREDTMKTPKLKFDRVDLSTRTKHISEQLKLVCAK

VSTILNLELPESNRTIRSSIAMLRPVTTSATIEPEFYGRKGEKDRIIKDITHGDCCVKDLTVIPITGPGGIGKTA

LTQQIYKAVKNLFDVNVWVCISLNFNAYRLKQEIADSIPKVENEQLGDLDENEQLGDLDDLIERRLKSKKILLVL

DDMWNCSNEDDWKRLLAPLRNAQTKGNVILVTTRFPAVAEIVQKTYRPIQLEGLEFEELWELFQAYVFGDEKLIN

HHAILQQTGEMIAKKLKGSPLAAKTVGRLLRNHLDFNHWTSVLESKEWELQTGDNDIMPALKLSYDYLPFHLQQC

FIYCALFPEDYKFDSDELIHLWIGLDILQSHQDQNKRTEDIALSCLNHLVDFGFFKKNVNEDGSPYYSMHDLLHE

LALKVSSCECLAVSSSNVRFVQIPPSIRHLSIVIDDMDVNDRVTFESIKTDFSTLSKRLDVEKLHSFMLFGRFHG

SFISPLGDLLSNAKSLRVILLSTPSYAVENMLHNFSNLVHLRYLRIIRGYFPEIRLPNTISRFYHLRILDVRKCN

GHFGLPRDIDNLVRLRHFLVPDDNLHSDVANVGKLKCLQELRRFKVKRQSEPFALRQLGQLELNGTLGIYNLENA

QAADEAKLLNKSHLHKLILHWSTKDCSQDEHILESLKPHNNLQELQIEGHGGATCPSWLGFNLSIKGLQSLSLHG

LDWNKFPPIGELWLVNQHSEKSLSCIEGQSFWNLKRLELVGIPRLEKWTGNDASRVFSQLEVFIVRDCPELIELP

YSKMDSTQFPTLKELEIVKCPTLSSLPPVPWTNSPCRALIEEVRSDFQHLKYSNLYQSKSHLWVAGKKGHLNCAF

SKVLASSNLTEMKYLILTKCPFLPLEHLQMLSCLKKLEINGSSSSLLMVEGGSAVRYQFPVKKLVIRKCGASGKE

LTLLLSHFPKLSDLTMYRLEKIAMLGVAEQQITATSASSPSLSGNKLENARFGQEQQQPRGEDEKAAASSGLLLL

PTQLQELFISCCSKLILHHDSLGENMEGRLRGIEGGLQGLRSLVSLTIIDCPDFFSSYSSSSSSFPFPSSLKYLS

IDRVSGMETLSLLSNLSSLTNLGIECGDLRGEDLCSLLAQGQLTRLRVNKNPKFFVGINPSSLQHLVTDDIAGVL

VVPICRLLSPSLTKLTIFCNNEVKRFTKEQNMALEHLSSLQELSFSFCRLQFLPSVLHRLVSLKRLEISCSEFIS

SLPKSGLPSSLEILDVSGGSEELKRQCRKLRGTIPIIKDSDWDLIVRELWDLIPCTQKELHLVAASTVCQLGNEQ

TILFREDNWLQGGTIRAIAPSIYDHVSTRIRKRRMVAEALSNRRWIKDISGALGTQAILEYLKLWSLIQSVDCSS

AEPDSLSWKWESSSKYTSKSTYRALFLGRIAFESTPI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	244	558	1.2e-59
NB-ARC [Pfam ls]	244	558	7.7e-60
LRR [Pfam ls]	1389	1411	0.55

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	986	1010	1
LRR [sensitive, ls]	986	1010	23
LRR [sensitive, ls]	1203	1231	2.2
LRR [sensitive, ls]	1203	1231	51
LRR [sensitive, ls]	1317	1342	0.93
LRR [sensitive, ls]	1317	1342	22
LRR [sensitive, ls]	1389	1411	0.024
LRR [sensitive, ls]	1389	1411	0.55
LRR [sensitive, ls]	1412	1433	0.34
LRR [sensitive, ls]	1412	1433	7.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	10	1452	1e-124
Mla1 [Hordeum vulgare].	213	855	2e-28
RPS2 [A. thaliana]	222	1003	7e-34
Pib [Oryza sativa].	236	767	7e-30
I2 [L. esculentum]	249	1368	1e-87
Pi-ta [Oryza sativa]	255	745	7e-16
N [N. glutinosa]	282	546	1e-11
RPM1 [A. thaliana]	287	975	1e-30
Xa1 [Oryza sativa]	833	1461	1e-20

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1946.m00188

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)