Report for 1946.m00192

 > 1946.m00192, length: 1494, copies: 1 

MESAAVNAARWVVGKALSPLSGGFVEAWAASTELGPNVGAIKMELLYAQGMLHNTRGRETSNPALQQLLLELRGL

AYDADDVLDELDYFRIQDELDGTYEAADEHASGCLLGLVLNAHHTARNIKRRYLSASCSCGGDEEASRHANEEEA

VAGSGCMRILACSAQSTIHLVGKHLPCFPFAPGLDNCDDSGALHISTMKTPKLKFDRVDLSTRMKHIVEQLKPVC

AKVSTILNLELLESCIAISINAEFSRKPGQTLVHPSNVAMNRPVTTSGIIDPEFYGRKGDRSRIIEDITRGDYCD

KDLTVIPIVGPGGIGKTTLTQHIYKEVHNHFDVKVWVCVSLNFNLYRLKEEISKWIPKLKDDEKYVDMDDSIEQR

LKSKKLLLVLDDMWKCDNEDEWKKFLAPLRKAMTKGNIILVTTRFPVVAEMVKTFDRPIQLEGLEPEEFWELFQA

CVFGDDKSIDDHANLLETGEKIVKKLKGSPLAAKTVGRLLRNHLDLDDWMRVLESKEWESQTSENDIMPALKLSY

DYLSFHLQQCFTYCALFPEDYKFDSEEMIHLWIGQGILHSQDENKTIEDIGLRYLNDLVNYGFFIKDVNEDGSPY

YTMHDLLHELALKVSSYEYLSISNTKVMSMQIPPSIRHLSIVIDDMDVNDRATFENIKKDFGTLSKRLDVEKLHS

LMIFGKNNGSFVIPFGNLLSKAKALRVILLSVASYAVENMLHNFSNLVHLRYLRINKGYFPELSLSNIISRFYHL

RILDVRQCSGHFGLPRDMNHLVRMRHFLVPNDNLHSEIASVGKLKCLQELRRFEVQRQVEAFALRQLGQLEDLKG

SLGIYNLENAQAPEEAELSNKSRLHKLILDCDIKRLTKDSLQEEHILESLKPHSNLRELHINGRGGTTCPSWLGV

NLSIKGLQTLRLDGVDWNKFPPLGKLLLINEHGEESLVCTTERSFPNLKRLELVGIQRLAKWVGNDSCFVFSLLK

VLIIRDCPELTELPFSHSTCPRSEQEMNLTQLRTLKELEIVNCPKLSSFPPIPWRGSPCRALIEGVGLDFQQLDY

SKNKQYELCMLVKGKDEHLDGAFWRRLVFGNLTDLKELDLKKCPPLPLEYLLMLSCLRRLTISDSSNVMSHLESE

NTVSYQFPIEKLEIFECGCSGKELTLFLSHFPKLSMFISRRCNKIRGLGVLGKQMTTMLASSSSPCGNKLEDARF

GLEQQQPRGEDEKVSAEAGLLLLPHQLQELNISEIPELILQIHSLVDGMEGGLRGIGGGLQGLHSLRAFSIWGCP

TFLSSYYSTSLSCFPFPSSLQKMYLSDVRGMETLAPLSNLSSLTRLTIWKCMDLSGEGLSSLLDHGQLTDLRIQM

TPKFFVRSDPSRLQQLQTDDIARVLAPPICSLISSSLTKLTIGFNHEVERITKEQSEALLLLSSLQDLEFYSCRK

LQSLPTGLHRLVGLKILEIDWCPAICSLPKGGLPSSLQELDVCRCENEELKRQCRKLRGTIPIIKDREY

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	262	568	1.2e-66
NB-ARC [Pfam ls]	262	568	3.7e-67
LRR [Pfam ls]	1414	1437	5.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	973	994	1.9
LRR [sensitive, ls]	973	994	44
LRR [sensitive, ls]	1009	1033	0.62
LRR [sensitive, ls]	1009	1033	14
LRR [sensitive, ls]	1294	1316	1.4
LRR [sensitive, ls]	1294	1316	34
LRR [sensitive, ls]	1414	1437	0.24
LRR [sensitive, ls]	1414	1437	5.7
LRR [sensitive, ls]	1438	1459	1.7
LRR [sensitive, ls]	1438	1459	39

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	10	1476	1e-126
RPP5 [A. thaliana]	261	1027	1e-10
I2 [L. esculentum]	267	1470	1e-89
Pib [Oryza sativa].	276	756	5e-31
Pi-ta [Oryza sativa]	278	754	2e-16
Mla1 [Hordeum vulgare].	280	830	1e-29
RPS2 [A. thaliana]	300	990	4e-30
N [N. glutinosa]	305	618	5e-14
RPM1 [A. thaliana]	305	989	1e-34
I2 [L. esculentum]	1074	1472	7e-11
Xa1 [Oryza sativa]	1217	1488	7e-21

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1946.m00192

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)