Report for 1946.m00193

> 1946.m00193, length: 2553, copies: 1
MESVAVNAARWVVGKALSPLSGGFVEAWAATTELGPNVDAIKMELLYAQGMLHNARSRETSNPALQQLLLKLRGL
AYDAEDVLDELDYFRIQDELDGTYEAAEEHAKGCLYGLVLNTRRTVRNIKKKACSCGDNGEASRHTNDGEALAGS
SCIHKLFSNARERSQFLCCAYPCKASHIEHTMKTPKLKFDRVDLSTRMKHIVEQLKPVCAKVSTILNLELLESNR
NIGLMSLNAALSRMPGQAPFLPSSVAMSRPVTTSEFIDPKFHGRMSEINKIIGITRGDYCGKDLTIIPIVGSEEI
AKLMPELKDEKSGGPDDLIEQRLKSKRFLLVLDDMWNCGNEDEWRRLLAPLRKAQSTGNIILVTTRFLAVAEMVK
TIDHSIQLEGLESEVFWELFQACVFGDEKSIGNHVDLLVTGKKIAEKLKGSPLAAKTVGRLLRNHLDLEHWTSVL
ESREWELQTGENDIMPALKLSYDYLPFHLQHCFTYCALFPEDYRFESDEMIHLWIGLDILQSRNQNKKVEEIGLS
YLNDLVNYGFFRKDMNKNGSPYYTMHDLLHELALKVSSYEYLAISSSSVRSVQIPPSVRHLSIVIDDTDVNHRVT
FENVKKDFSTLHKRLDVEKLQSLMLFGQYHGSFVIPFEEGNVMMMVEAQDKVENLKQEGRTVQEYASELQHLWAD
LDHYDPLQLKHDDDIVIGNKWLQRRRVIHFLKGLNKEFEDRRAAMFHQATLPNMEEAISAMVQEEMRQKVMKGSN
PVRSAYITINDRECYNCGLKGHVSYNCPSPRNNNGRGVARGGARGGFGGFNGSRGGYGGYVGDRGGRGGERGGRG
GSRGRGLGGPRANVVMGESSSITLTGEQAAQWEEWQKNKGPVDSNQQNSAKATTSHFGNFANYAHTGEGTQAHAL
ASTYRHHVDWIIDSGASKHVTGLPNNFSSYSPIAPSETIQIADGSSQLIHGIGSVECTPSISLSSVLHVPSFPVN
LLSVSSIIDQFKCIVIFDENSCLFQEKGTGRRIGTGVRRNGLWYINQEEMGLAVVVGDTEKEIILLHCQLGHPSF
ESLSKLYPDLFTKVDKSRLVCDACEFGKHTRSTYAGIGLRSCEPFILIHSDVWGPCPVTSVSGFEWFVTFIDCYT
RMTWIYMLRHKNEVIRCFQDFHKLVTNQFDARVRIIRTDNGTEYINSEFVSYVSDHGIIHQTTCPGAPPQNGVAE
RKNRHLLEVARSLMFQMNVPKYLWSEAVMTAAYLINRMPSRILGMKSPAELLLGKREFKVPPKEFSTVIEIDSRE
GEIVEVDAHKQGDEDVVIGSIPSFVGDTIEKVVDIGEKVVDISCDKDEGVVVGTIPCPLERVEVQQTKMRVYQRR
NKNQVDKVTGKEQVHQRSQIQNQGERSGEPMQEQDKESQQLQQFEYPVPDSSSSLSPTSSSLLETSGNISPTFKQ
VELPLAQRRETRSNAGRPPIRLGFEHLSSRHDIANYISYSHISPAYKAFIASLQIVPIPKDWRCAKQDPRWKDAM
KEELRALEKNKTWELVKLPMGKRAVGCKWVFTVKQTPEGKVDRYKARLVAKGYSQTYGIDYDETFAPVAKMSTVR
ILISCAVNFGWPLHQLDVKNAFLHGDLQEEVYMEIPPGFGNSQTVGKVCRLKKSLYGLKQSPRAWFDRFRRALCN
MGYSQCNGDHTVFYRHRGAHITILAVYVDDIVITRDDVEEIKCLKQRLGEAFEVKDLGPLRYFLGIEVARSSKGI
VLSQRKYVLDLLTETGMLGCRTSATPIDRNHQLSAQSGDPVDRETYQRLVGRLIYLCHTRPDISYAVSVVSRYMH
DPRTTHLEVVHRILRYLKGTPGKGLWFRKNQHLDVEGYCDADWASSVDDRRSTSGYCVFVGGNVVCWRSKKQAVV
ARSTTEAEYRAMALSLSEMLWVKNLLLELRLFRNNTVVLHCDNKSAINIANNPVQHDRTKHIEIDRFFIKEKIDN
GALRLQYIKSSEQLADCLTKGLGPSESELWLVNEHGEESLGCTTSQSFQKLKRLELLGIPQLAKWVGNDASHVFS
LLEVFIIRDCPELMELPFSHSTCPRSGQEMNLTQFPTLRELEVVNCPKLSSFPHIPWTSSPCRVLIDEVGSDFQR
LDYSKNNQSEFCLKVVGKDGHLDMSFWNVLAFSNLTELKVLYLKKCPPLPLKHLLVLSCLRSPTIHDSSNVLLNV
EAENTVGYQFQIEGLSIDDCSCSGKELTLLLSLFPKLSMFSLQGCGKIRVLGVAKEQTMAMSALSSSPSGHKLED
AHIGQEQEQEQLRGEDEKAAADAGLLLLPHQLQDLYIENISKLILQFDSLVDGMAGGLRSIGGGLQGLHFLRTLT
IRGCPNFLSSYYSSSSSSCFPFPSSLQYLHLDGVGGMETLAPLSNLSSLTRLTIRKCMDLRGEDLSSLLAHGQLT
NLNIFETPKFFVGCGSDSLRLQCLQTDDITKVLAAPICSLLASSLTSLTISWNDEVERFTKEQSAALLLLSSLQD
LEFWYCSELQSLPTGLHRLTSLKRLKIWSCPAIRSLPKGGLPSSLEVLDVRSSNNEELKRQCRDLRGTIPIIKDR
RYY

HMM searches against classifier domains (fs and ls)

DomainBeginEndE-value
NB-ARC [Pfam ls]2495151.5e-33
NB-ARC [Pfam fs]3195154.4e-48

Searches for specific additional domains (secondary HMMs)

DomainBeginEndE-value
Integrase core domain [fs]109012532.5e-49
Integrase core domain [ls]109012532e-49
LRR [sensitive, ls]206220852
LRR [sensitive, ls]2062208546
LRR [sensitive, ls]218622134.2
LRR [sensitive, ls]2186221397
LRR [sensitive, ls]235023720.4
LRR [sensitive, ls]235023729.4
LRR [sensitive, ls]247224950.34
LRR [sensitive, ls]247224958
LRR [sensitive, ls]249625170.94
LRR [sensitive, ls]2496251722

BLAST searches against classifier sequences

Query sequenceBeginEndE-value
I2 [L. esculentum]2416243e-41
Xa1 [Oryza sativa]2576394e-63
RPS2 [A. thaliana]3096258e-17
RPM1 [A. thaliana]3145652e-24
Pi-ta [Oryza sativa]3176281e-11
Mla1 [Hordeum vulgare].3195882e-19
Pib [Oryza sativa].3196343e-21
Xa1 [Oryza sativa]197425464e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

DomainBeginEndE-value
Zinc knuckle7627795.7e-05
Integrase core domain109012532.1e-49

NCOILSv2.0 search for coiled-coil domains

DomainBeginEnd

TM-HMM search for transmembrane domains

DomainBeginEndOrientation