Report for 1947.m00139

 > 1947.m00139, length: 764, copies: 1 

MASRSSRGERVGVVFVLVVVVLCVDVSTLVAAQPLVSSQAKTLLWVRRLLGFPPALDALAGAPDACALPPTPSLT

VACAGGQVTELSVLGGRAPGAALPANFSADALFTTLTRLPALSRLTLASLGVWGELPGAKLHRLQALRVLNLTGN

CLYGAVPEHFSRMYSLQSLVLSRNRLNGAVPNLSGLAFLDELDLGHNRLGPAFPEVGNAVVRLVLADNNFTGRIP

AAMSSLGQLQFLDVSGNRLQGWIPSSIFALPALRHIDLSRNQLAGQLPASTACADALAFVDVSDNLLAGARPACM

RGNSSARTVLDAGNCFRDARSQRPSTYCNPGALAAVLPPAQGTGGEQGSGGKGGQVGMALGIVGGVVAGAALIAL

VMMAVLRRARRQNPEVSVLPKSPLASTPAAKKKAAADGGKAPAKVTQRIVTPAEKRHASQAARVNTLEVPAYRVY

TLEELQEATNNFGSSNLIKSSPVVKHYNGQLQDGSRVSLRCLKLKPKYSPQSLTQYMEIISKLRHRHLVSIIGHC

IVEDQENPNIASSLCLLSECVTNGSLRSHLTEWRKREMLKWPQRVSAAIGVARGIQFLHDVTAPGIVHNDLSIEN

ILLDKTLTSKISNFNLPLISTSKNGKIFSESPFATSEDNDLGSVPSTEQGDKDDIYQFGLILLEVITGKPTESPK

DLDSLKTQISEAIAEDPDLLKDMADPTIRGTFAVESLSTVAEIALNCIASDTSSRPSIEDVLWNLQYSMQVQDGW

ASSESLSLSTRSQG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	165	187	0.88
LRR [Pfam ls]	233	256	4.1
Ser/Thr pkinase [Pfam ls]	473	742	2.6e-10
Ser/Thr pkinase [Pfam fs]	507	612	1.7e-11
Ser/Thr pkinase [Pfam fs]	652	737	0.43

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	141	164	0.37
LRR [sensitive, ls]	141	164	8.7
LRR [sensitive, ls]	165	187	0.038
LRR [sensitive, ls]	165	187	0.88
LRR [sensitive, ls]	188	207	2.8
LRR [sensitive, ls]	188	207	66
LRR [sensitive, ls]	209	232	1
LRR [sensitive, ls]	209	232	24
LRR [sensitive, ls]	233	256	0.18
LRR [sensitive, ls]	233	256	4.1
LRR [sensitive, ls]	257	279	0.72
LRR [sensitive, ls]	257	279	17

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	53	314	3e-14
FLS2 [A.thaliana]	81	298	8e-15
FLS2 [A.thaliana]	83	297	3e-16
Xa21 [O. sativa]	89	571	2e-23
Cf-9 [L. pimpinellifolium]	96	314	7e-13
FLS2 [A.thaliana]	98	308	2e-16
CLV2 [A. thaliana]	101	273	8e-14
Xa21 [O. sativa]	104	297	2e-16
CLV2 [A. thaliana]	110	298	2e-13
FLS2 [A.thaliana]	111	740	9e-35
FLS2 [A.thaliana]	114	297	2e-13
CLV2 [A. thaliana]	115	309	1e-12
Cf-9 [L. pimpinellifolium]	117	329	6e-12
CLV2 [A. thaliana]	117	298	5e-17
CLV2 [A. thaliana]	120	300	2e-13
CLV2 [A. thaliana]	129	290	2e-14
FLS2 [A.thaliana]	129	313	4e-17
FLS2 [A.thaliana]	139	311	3e-16
Xa21 [O. sativa]	140	297	6e-13
Cf-9 [L. pimpinellifolium]	142	294	3e-14
Rpg1 [Hordeum vulgare]	445	737	2e-13
Pto [L. esculentum]	446	748	5e-35
Rpg1 [Hordeum vulgare]	448	737	4e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	13	35	in -> out
putative TM domain	13	35	in -> out
putative TM domain	359	381	out -> in
putative TM domain	359	381	out -> in

Report for 1947.m00139

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)