Report for 1950.m00142

 > 1950.m00142, length: 223, copies: 3 

MAYLRVVSIGCLYLFDFLCFLPIAMSDQTETDRHALLCFKSQLSGPTVVLASWSNASLEHCNWHGVTCSMRVPRR

VIAIDLPSEGIIGPISPCIANITSLTRLQLSNNSFHGGIPSELGLLNQLRNLNLSRNSLEGNIPSELSSCSQLQI

LDLQSNSLQGEIPPSLSQCVHLERIFLANNKLQGRIPSAFGDLPKLRVLFLANNRLSGDIPPSLGSSLTLTYV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	99	122	0.11
LRR [Pfam ls]	123	146	0.04
LRR [Pfam ls]	147	170	0.031
LRR [Pfam ls]	171	194	0.012
LRR [Pfam ls]	195	219	0.0027

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	99	122	0.0045
LRR [sensitive, ls]	99	122	0.11
LRR [sensitive, ls]	123	146	0.0017
LRR [sensitive, ls]	123	146	0.04
LRR [sensitive, ls]	147	170	0.0013
LRR [sensitive, ls]	147	170	0.031
LRR [sensitive, ls]	171	194	0.00051
LRR [sensitive, ls]	171	194	0.012
LRR [sensitive, ls]	195	219	0.00012
LRR [sensitive, ls]	195	219	0.0027

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	13	223	6e-18
FLS2 [A.thaliana]	20	221	4e-30
FLS2 [A.thaliana]	31	223	7e-18
Xa21 [O. sativa]	32	221	8e-34
CLV2 [A. thaliana]	39	223	4e-16
FLS2 [A.thaliana]	39	223	4e-16
Cf-9 [L. pimpinellifolium]	41	211	3e-14
FLS2 [A.thaliana]	46	189	2e-12
Cf-9 [L. pimpinellifolium]	54	210	2e-14
CLV2 [A. thaliana]	75	223	1e-19
Xa21 [O. sativa]	75	211	3e-17
CLV2 [A. thaliana]	76	223	2e-17
FLS2 [A.thaliana]	76	216	2e-14
Xa21 [O. sativa]	76	215	3e-15
CLV2 [A. thaliana]	78	211	1e-14
FLS2 [A.thaliana]	78	223	4e-14
CLV2 [A. thaliana]	79	211	6e-15
FLS2 [A.thaliana]	79	216	6e-18
FLS2 [A.thaliana]	79	221	5e-16
FLS2 [A.thaliana]	79	216	1e-13
FLS2 [A.thaliana]	79	211	3e-13
Xa21 [O. sativa]	79	215	2e-16
Xa21 [O. sativa]	79	223	5e-13
Cf-9 [L. pimpinellifolium]	81	218	5e-14
Cf-9 [L. pimpinellifolium]	81	221	3e-11
FLS2 [A.thaliana]	81	215	1e-12
FLS2 [A.thaliana]	86	215	2e-17
FLS2 [A.thaliana]	86	218	2e-16
FLS2 [A.thaliana]	86	220	7e-16
FLS2 [A.thaliana]	86	213	6e-15
Xa21 [O. sativa]	86	215	4e-18
FLS2 [A.thaliana]	88	223	2e-16
FLS2 [A.thaliana]	88	215	1e-14
Xa21 [O. sativa]	88	223	8e-13
Xa21 [O. sativa]	88	221	3e-12
Cf-9 [L. pimpinellifolium]	98	220	3e-14
Cf-9 [L. pimpinellifolium]	103	187	2e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1950.m00142

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)