Report for 1950.m00158

 > 1950.m00158, length: 1137, copies: 2 

MAALRVFSTGVICHLIFHFLFFQPLAISDETETDRDALLCFKSQLSGPTGVLASWNNASLLPCNWHGVTCSRRAP

RRVIAIDLPSEGIIGSISPCIANITSLTRLQLSNNSFHGGIPSELGFLNELQNLDLSMNSLEGNIPSELSSCSQL

QILDLQNNSLQGEIPPSLSQCVHLQQILLGNNKLQGSIPSAFGDLPKLSVLFLANNRLSGDIPPSLGSSLTLTYV

NLGKNALTGGIPKPMLNSSSLQQLILNSNSLSGELPKALLNTLSLNGIYLNQNNFSGSIPPVKTVSPQVQYLDLG

ENCLTGTIPSSLGNLSSLLYLRLSQNCLDGSIPESLGHIPTLQTLMLTLNNFSGTIPPPLFNMSSLTFLTVANNS

LTGRLPLEIGYTLPNIEGLILLANKFKGSIPTSLLNSTHLQMLYLAENKLTGIMPSFGSLTNLEDLDVAYNMLEA

GDWGFISSLSNCTRLTKLMLDGNNLQGNLPSSVGNLSSSLQRLWLRNNKISGPIPQEIGNLKSLTELYMDYNQLT

GNISLTIGNLHKLGILSFAQNRLSGQIPDNIGKLVQLNYLNLDRNNLSGSIPLSIGYCTQLEILNLAHNSLNGTI

PETIFKISSLSMVLDLSYNYLSGSISDEVGNLVNLNKLIISYNRLSGDIPSTLSQCVVLEYLEMQSNFFVGSIPQ

TFVNMLGIKVMDISHNNLSGEIPQFLTLLRSLQVLNLSFNNFHGVVPSSGIFANASVVSIEGNDHLCTETPTTGM

PLCSKLVDKKRNHSRSLVLVLTIVIPIVAITFTLLCLAKIICMKRMQAEPHVQQLNEHRNITYEDVLKATNRFSS

TNLLGSGSFGTVYKGNLHFPFKEKGNLHLQEEHIAIKIFNLDIHGSNKSFVAECETLQNVRHRNLVKIITLCSSV

DSTGADFKAIVFPYFPNGNLDMWLHPKSHEHSSQTKVLTLRQRINIALDVAFALDYLHNQCELPLVHCDLKPSNI

LLDSDMVAHVSDFGLARFVYTRSNAHKDISTSLACLKGSIGYIPPEYGMNEDISTKGDVYSFGILLLEMVTGSSP

TDENFNGDTTLHDFVDRALPDNTHEVVDPTMLQDDISVADMMERCFVPLVKIGLSCSMALPRERPEMGQVSTMIL

RIKHAASNMGVR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	101	124	0.11
LRR [Pfam ls]	125	148	4.1
LRR [Pfam ls]	149	172	0.0074
LRR [Pfam ls]	173	196	0.016
LRR [Pfam ls]	197	221	0.022
LRR [Pfam ls]	293	316	0.018
LRR [Pfam ls]	317	340	1.4
LRR [Pfam ls]	341	364	7.3
LRR [Pfam ls]	365	389	5.4
LRR [Pfam ls]	414	436	0.019
LRR [Pfam ls]	437	463	6.4
LRR [Pfam ls]	464	487	0.19
LRR [Pfam ls]	489	512	0.045
LRR [Pfam ls]	513	536	0.96
LRR [Pfam ls]	561	584	0.48
LRR [Pfam ls]	585	609	0.26
LRR [Pfam ls]	634	657	0.92
LRR [Pfam ls]	682	705	1.9
LRR [Pfam ls]	706	731	1.7
Ser/Thr pkinase [Pfam fs]	823	1098	4.1e-45
Ser/Thr pkinase [Pfam ls]	823	1110	6e-41

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	101	124	0.0049
LRR [sensitive, ls]	101	124	0.11
LRR [sensitive, ls]	125	148	0.17
LRR [sensitive, ls]	125	148	4.1
LRR [sensitive, ls]	149	172	0.00032
LRR [sensitive, ls]	149	172	0.0074
LRR [sensitive, ls]	173	196	0.00068
LRR [sensitive, ls]	173	196	0.016
LRR [sensitive, ls]	197	221	0.00093
LRR [sensitive, ls]	197	221	0.022
LRR [sensitive, ls]	245	268	0.54
LRR [sensitive, ls]	245	268	12
LRR [sensitive, ls]	269	291	0.51
LRR [sensitive, ls]	269	291	12
LRR [sensitive, ls]	293	316	0.00076
LRR [sensitive, ls]	293	316	0.018
LRR [sensitive, ls]	317	340	0.06
LRR [sensitive, ls]	317	340	1.4
LRR [sensitive, ls]	341	364	0.31
LRR [sensitive, ls]	341	364	7.3
LRR [sensitive, ls]	365	389	0.23
LRR [sensitive, ls]	365	389	5.4
LRR [sensitive, ls]	414	436	0.00082
LRR [sensitive, ls]	414	436	0.019
LRR [sensitive, ls]	437	463	0.28
LRR [sensitive, ls]	437	463	6.4
LRR [sensitive, ls]	464	487	0.0081
LRR [sensitive, ls]	464	487	0.19
LRR [sensitive, ls]	489	512	0.0019
LRR [sensitive, ls]	489	512	0.045
LRR [sensitive, ls]	513	536	0.041
LRR [sensitive, ls]	513	536	0.96
LRR [sensitive, ls]	537	560	0.69
LRR [sensitive, ls]	537	560	16
LRR [sensitive, ls]	561	584	0.021
LRR [sensitive, ls]	561	584	0.48
LRR [sensitive, ls]	585	609	0.011
LRR [sensitive, ls]	585	609	0.26
LRR [sensitive, ls]	610	633	4.1
LRR [sensitive, ls]	610	633	95
LRR [sensitive, ls]	634	657	0.04
LRR [sensitive, ls]	634	657	0.92
LRR [sensitive, ls]	658	681	0.97
LRR [sensitive, ls]	658	681	23
LRR [sensitive, ls]	682	705	0.081
LRR [sensitive, ls]	682	705	1.9
LRR [sensitive, ls]	706	731	0.072
LRR [sensitive, ls]	706	731	1.7

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	15	1133	1e-157
Xa21 [O. sativa]	15	601	1e-87
CLV2 [A. thaliana]	16	746	7e-69
Cf-9 [L. pimpinellifolium]	54	741	3e-73
Xa21 [O. sativa]	78	341	9e-30
Xa21 [O. sativa]	90	270	5e-23
Xa21 [O. sativa]	201	945	1e-159
Xa21 [O. sativa]	464	712	5e-31
Xa21 [O. sativa]	536	735	3e-26
Rpg1 [Hordeum vulgare]	805	1066	1e-25
Pto [L. esculentum]	814	1120	3e-26
Rpg1 [Hordeum vulgare]	820	1047	1e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	766	788	out -> in
putative TM domain	766	788	out -> in

Report for 1950.m00158

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)