Report for 1956.m00174

 > 1956.m00174, length: 1291, copies: 2 

MDVAAAAGVVGGFLQVVFDKYYGSKLEQWAARSGLHGDFLSLKNQLHMVRAMLEAGGGGNAPHNDSLRSLIVELK

SAAYAADNVLDEMEYYRLKELVEDTSGRDGGAPSSSARQVVGRILVPAPLLSNPFKRARTGADEALQGQGADTDT

PNFDQDAMSSKIKSISCCLEQIAGMVRRIIELDKLVSMASLGHVQPEVVVSLRQTSSFPTETKLFGRDESTNNII

NLMLRTDMESRYNNFNVLPIVGIGGVGKTALAQSVYNHQRVVDSFQVRAWACVSDTLDVRRVIADLIDSIDGGQE

TPKFHRVPSLDATQRTLLRKIEGKRFLIVLDDVWVSSHWEKLCGPFSAGMSGSMVLVTTRQRKIAKAMGTFDSLT

LHGLHDNEFWAFFLQCTNITEDHSLARIGRKIALKLYGNPLAAKTMGRFLSENHEEEHWCKFLNRNIWELKQEPD

DVMPVLLLSYQHLPLSLQRCFTYCAIFPRGYKFTEQELIFAWMAQGLVPTPGEDQTLEDVGKEYLNELLSCSFFH

IIESGHYMIPGLLHDLAQLVAEGEFQATNGKFPISVEACHLYISHSDHARDMGLCHPLDCSGIQMKRRIQKNSWA

GLLHLKNLRTIMFSASSSIWSPGSEVVFVQSNWPSTIRLLSLPCTFRKEQLAAVSNFIHLRYLDLRWSRLEELPE

AVCKLYLLQVLNIKHCPCLLHLPPRIANLLNFEHLIADEGKHLLTGVPCVGNMTSLLLLDKFCVRKTRGFDIGQL

KRLRNLRGLLKVQNLENVDGNEEAAKARLSDKRHLTELWLSWSAGSCVQEPSEQYHVLEGLAPHSNVSCLHITGY

RGSTTPSWLASNLSLSSLEYLYLDYCSELEILPPLGLLPHLRKLHIVNMHALRRIGSEFYSSGQVVGFPCLEGLF

IKTMPELEDWNVDDSNVFPSLTSLTVEDCPKLSRIPSFLWSRENKCWFPKLGKINIKYCPELVLSEALLIPRLPW

LLDIDIQIWGQTVINLRGGCLEVSEINANTSSGPINAVLQLHWLKHVSSFHIWAQDSLSVHPCKQKTEPSACNSE

HMVNSLQTSAEKVEVTGYGITDELLSAILENEICPSSLSISDCPQITSLDLSPLRSLKSLVIHNCVSLRKLFDRQ

YFTALRDLEVTNASSFAEAWSELLGSRYAEWGQVTTSLESLTVDSTLFLNSPLCAVLTSLKKLTIHSDFRVTSLS

RQQVQALLLLTSLQDLGFIQCCNLHSLPSELHKIYTLKQLEIDSCPCVESLPNNGLPEKLEKLIIRGCNRRLYTG

ASMMGSTSTKVHLVDR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	198	503	3.9e-56
NB-ARC [Pfam ls]	198	503	3.7e-56
LRR [Pfam ls]	659	681	2.9
LRR [Pfam ls]	842	864	0.43

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	659	681	0.12
LRR [sensitive, ls]	659	681	2.9
LRR [sensitive, ls]	682	705	0.72
LRR [sensitive, ls]	682	705	17
LRR [sensitive, ls]	842	864	0.019
LRR [sensitive, ls]	842	864	0.43
LRR [sensitive, ls]	920	942	1.4
LRR [sensitive, ls]	920	942	32
LRR [sensitive, ls]	1084	1108	0.95
LRR [sensitive, ls]	1084	1108	22
LRR [sensitive, ls]	1236	1257	0.72
LRR [sensitive, ls]	1236	1257	17

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	1	1268	1e-108
RPM1 [A. thaliana]	157	936	5e-38
Xa1 [Oryza sativa]	165	1268	6e-97
Pib [Oryza sativa].	183	687	8e-25
Pi-ta [Oryza sativa]	213	759	4e-24
RPS2 [A. thaliana]	242	962	7e-21
Mla1 [Hordeum vulgare].	245	756	4e-28
Xa1 [Oryza sativa]	1002	1282	3e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1956.m00174

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)