Report for 1972.m00171

 > 1972.m00171, length: 740, copies: 1 

MAMPLFLGLAVLTLLLATAAAALPPPGCPRTCGGVAVEYPFGIGPNCSLSDGFSLDCVRDTPQLRLGPVKQQQTV

RVLGVDLLHGKIRTTNAIASQCLDARTGKLVNTSWEGLNAAALPYRFSDEDNRFFAVGCSGVVLLQGTAAGADDR

VVIGCISTCFGNASIRTGSCSNIGCCETAIPKGLNSYLLAMERMPGGSPVNRCFYATLMEAASFSFEAADAAADG

FYRKSSNGTVPVVLSFVVGSETCKEAQTSDTYACLSDHSVCVDGAPGYVCNCSQGYTGNPYLPNGCVDIDECGPG

KHGCPDGMICTNFPGGYNCSCPEGEYKSNKNGVLICESDQKRSSLPVSVIIVIGVSGGVVIAVIAILITYLMRQR

RALADVKRKYFERHGGLLLYDELSTRPGNTFTIYMEEQLEQATNGFDDGNILGRGGHATVYMGIVPAGGDGLVVA

IKRCKVMDETNKKEFGKEMLILSQVNHKNIVKLLGCCLEVDVPMLVYEFVPNGTLYHLIHGGGGGGGDGGVISFA

TRLRIAHESAESLAYLHSFASPPILHGDVKSSNILLDESFMAKVSDFGASILAPTDEAQMVTMVQGTCGYLDPEY

MRTCQLTEKSDVYSFGVVLLELLTGKKPLCLDGPEEERSLSARFVAAMGERKVGEMLDEQVKREASGESLEEITR

LALECLQMCGADRPAMKEVAERLGGLRKLHQHPWTQDAVELEEARCLLHGSPEYQLSARYTTGSR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
Ser/Thr pkinase [Pfam fs]	421	628	1.5e-45
Ser/Thr pkinase [Pfam ls]	421	710	5.2e-46

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	349	702	1e-35
Rpg1 [Hordeum vulgare]	401	698	6e-25
Pto [L. esculentum]	412	698	2e-45
Rpg1 [Hordeum vulgare]	412	708	2e-28

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	24	in -> out
putative TM domain	5	24	in -> out
putative TM domain	349	371	out -> in
putative TM domain	349	371	out -> in

Report for 1972.m00171

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)