Report for 1978.m00154

 > 1978.m00154, length: 812, copies: 2 

MAEVSISSFAITVLEKAASFGTDWAVSEIKSAWNVKKELEKLETSLRSICAVLRDAECKQSTSHSLQEWLDNLKD

AVYDIDDVLDDVSTEALEQEVRNSFIHRTRNMLTYPFKLSQKIKEVRKKLDEIAANRAQFGLTEHVIDVHTSGSS

NRETHSFITEPEIIGRDEAKRKIVETICTATESNPLSVLPIVGLGGIGKTALAQLIYNDVQITETFQKKLWVCVS

NVFDLKKILDDIMQSGTGKSNKHLNLEMLQSKVRGFLCEKRYLLVLDDMWNDKVNEWDELKCLLSSGGSGSVIIV

TTRNMSVASIVKTLEPYDVAKLTDDKCMQVFMHYAFRGGGPHDPKLLEIGKSIVEKCCGIPLAAKTLGSLLCTSH

DVGEWRRVMEDKIWNTEAKVYGLIPALKLSYDALPPHLRACFSCLSIFPKDHQLFYSTTVMLWMALGMLNTGKES

KQMISAGSKCFHDLLGRSLFQDQIIVYDETIQSCKMHDLIHDLAQFVSENEHAVISCEKTAFSKRVKHLVLVNLQ

TVHLAQCDQLEGLPRDVHQLVSLTYLSLTSKQKYLLKSGFCGWPSLTFLYLHHCVELTSLTEGFGSLAALRELRI

FNCPKLASLPSAMKQLSSLEKLVLNNCNELDLMEPGEALSGLGSLRALNLVGLPKLVGFSASFQSAASSLQYFCI

GDCQGLEKLPDFIQSFTCLKIIGIRDCPELSRRCTAESGEDFHLIHHVLRIYIDNKIWEKALVSTETVLLHQSTV

VSTEVVREHEEGLALWLHSRAFLSRSKDDTRVQSYRSLVLVRLRRDSACTVAMVPEPDGRTG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	147	449	9.4e-65
NB-ARC [Pfam ls]	147	449	3.6e-65
LRR [Pfam ls]	523	546	6.3
LRR [Pfam ls]	570	593	0.45

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	523	546	0.27
LRR [sensitive, ls]	523	546	6.3
LRR [sensitive, ls]	570	593	0.019
LRR [sensitive, ls]	570	593	0.45
LRR [sensitive, ls]	594	617	0.42
LRR [sensitive, ls]	594	617	9.8
LRR [sensitive, ls]	618	640	2.7
LRR [sensitive, ls]	618	640	63
LRR [sensitive, ls]	644	667	4.5
LRR [sensitive, ls]	644	667	110
LRR [sensitive, ls]	669	692	1
LRR [sensitive, ls]	669	692	23

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	28	720	7e-37
RPS2 [A. thaliana]	34	760	6e-22
RPM1 [A. thaliana]	35	501	6e-34
I2 [L. esculentum]	37	623	1e-77
Pib [Oryza sativa].	53	331	1e-14
Pi-ta [Oryza sativa]	69	530	8e-30
Xa1 [Oryza sativa]	113	522	3e-57
M [L. usitatissimum]	150	423	6e-14
Pib [Oryza sativa].	160	622	6e-31
L6 [L. usitatissimum]	162	434	1e-13
N [N. glutinosa]	184	686	2e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	37	57
putative coiled-coil	113	134

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1978.m00154

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)