Report for 1989.m00204

 > 1989.m00204, length: 2589, copies: 1 

MAAPPNSPIGWWREVRARLWLHTVEVEVNFLAHPFVVYSHFPLFESGSPPSFSLKAALHLISKKKDQGPLLLGVS

CSSDLTTSQIATKKLYFAKMKDSAYDADDVMDEFDYLILKANAQQKSKLSSLASSSLAIGKRLVGQDKFRSKLRR

VLNSLIRVKECADMLIKVIGAENSNSYMPPQPLQWRVTSSISPGQIIIGRQNEQDDLVHRLLREADGPEPSRGLT

ISPTPSIITIVGSGGIGKTALAQLIYNDRRIVSGFDLRTWIYVSNIFNKVKITKEILKSIDRNSDITNFSFNMLQ

EDLKNKLTAKKFLLVLDDVWYDEKIGELTNADRWRELFAPLCYGAKGSKILVTARTNIVSRILGCPAPFHLEGLK

GEDSWNLFRICAFGAEDPGNYPELESIGECIVQKLNGSALVIKVVGAHLNANLNVEEWTRVMKSSSSNKEDIMQI

LRLSYECLPGHLQQCFTFCSLFPKGYSLEPDLLVNMWIAHKFVHGHIGTYESMRETGRSYFNELLSRSFFQELQY

GHTIRYVMHDLMNDLASHISRAAPRRCAMSDARSRRLVASSTWRQQDAELAAAEERRRATAQTAAAAAARVAKLA

AVELAAARAEAEAEAAEDAARAAEVEVETLRSSINGSIAGDITADRELEELARGRAWERAERWAAAHLHGGGGGP

RDRAPADGNPDGRWRAGGSPEPARGPRRQRGSLSPDWRHGHHGVQTVVRDFGPGGGWPTLTKTNYIEWAAVMRVR

LQSGTGDVDYDEDRRALDALIAAVPPEMQFSLSQKRTAKEAWDAIVAARIGSDRARKSTLQALRKEWENLPFKPG

EDVDDFALRLNTLLQKMVQYGDDTYDEERAVEKLFRCVPEKYRQIARSIESLLDLSTMSIEEALGRLKVVDGDEP

QPLSGPITIGGKLNLTREQWEASQGDGRKGESSSPTGGRKPRKARGGVQLRWARRRAEGGARRGAQGVATGNHKP

ARDNACRNCGKLGHWAKDCRQPRRGQAHVARVEEEEPALLLAHASIELPPAAPAAAAFLHLDEPKRPRLRQVRGN

ASGVEIKGVGSVTFTAKSGEHRLLTGVYYIPALRNSIISVGQLDETGSRVLVKDALMRIWDRRRRLLAKVTRGTN

QLYILSAQVAQPVCLAARRDDEAWQWHERFGHLHFEALKQLSAKEMVRGMPCLDHVEQLCDVCVVTKQRRLPFPQ

QTSFRAKERLELVHGDLCGPVTAATPGGRRYFLLLVDDLSRYMWVMVLGSKGEAADAIRHAQATAEAECDRKLRR

GMPAIFWGEAVVTAAYILNRSPTKALDGRTPYEAWHGRKPAVSHLWVFGCLAFAKELGHIGKLDDRSTPGVFIGY

AEGSKAYRILDLETQRVRTARDVVFDEGRGWVWDKAVDDGSTPMYDDFTVEYVHFEGAGGVGSSSSSSVSTPAPE

SPPTPTPTHPRATTSTTTSSSSTPPQPVTPHAPAPTVTPPSTSTSTPARVERSPVEFATPLSHDGERIAYHDGEQ

LRYRTMEDLLGDQPVPGLVPRDLEAQLHLACDDGEPRSFAEAEKHAAWRAAMQSEMDAVQENRTWELADLPRGHR

AITLKWVFKLKRDEAGAIVKHKARLVARGFVQQEGIDYDDAFAPVARMESVRLLHALAAQEGWGVHHMDVKSAFL

NGDLKEEVYVHQPPGFVIPGKEGKVLRLHKALYGLRQAPRAWNAKLDSTLKGMGFEQSPHEAAIYRRGNGGNALL

VGVYVDDLVITGTKDAEDDSGITLRQTAYAKRVVELAGLTDCNPALTPMEERLKLSRDSTAEEVDATQYRRLVGS

LRYLTHTRPDLAFSVGYVSRFMQRPTTEHQQAVKRIIRYVAGTLDHGLYYPRCPGKAHFVGWQSVKQQVVALSSC

EAEYMAASAASTQALWLARLLSDLLGRDTGTVELRVDSKSALALTKNPVFHERSKHIRVRYHFIRSYLEEGSIKA

SYINTKDQLADLLTKPLGRIKRLVTFPKCLGTLSSILCIDVHRMCTVDLAASSHMPCLRAAGEFCVDKSKVQGLE

VLKQMNELQGSLAITSLENVKSRDEATDAQLFRKSQIFKLKLQWGSSNASSKSDKANDVFDALRPHSGLEELIVQ

GYPGCVSPSWLESEWLSRLRHISISDCKCWKLLPSLGQIQSLRTLRIARLNAVVCIGPEFYGTAGFPSLEILEMI

ELPELAEWSSVDCFFPALLEVCIRGCPKLKQLPPVVLPPVRMSIYVSTEVCRLRNHNRLETCFTQEVSLSTLLDM

LHLRRLEPVKCVNIIFEGANTLEDGLKDVTTNLPSLEELVIRGCSDLQHAFAASKQREEDGNVFSSASIQCLKMI

GCNLTVDIFLSVFQNISFLSLWINDCNITYSTPERVLAMPKSVTGVLEKLCILSCDGLTAFMGLETFLRLSTIEI

ASCPKLTSVPDFRCLPALQNLIIKNCPELKELPENGNLTTLTALVVEHCNALISLRNLRDLSFLSKLVVRNCMKL

MALPQMISFSSLRVLIIKNCPEVVSLPEDGLPVSLNCLYLAGCHPVLEEQFDQKNGSEWEKYEVLPFCFFADKSI

EDIEEIAKEVLMADDLTRISIQGNRVHATDSAASSSSFP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	183	498	2.5e-59
NB-ARC [Pfam ls]	183	498	1.7e-59
LRR [Pfam ls]	2394	2416	4.8
LRR [Pfam ls]	2486	2507	6.6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
Integrase core domain [fs]	1205	1259	2.4e-09
Integrase core domain [fs]	1271	1311	5.3e-08
LRR [sensitive, ls]	2118	2140	1.2
LRR [sensitive, ls]	2118	2140	28
LRR [sensitive, ls]	2192	2216	5
LRR [sensitive, ls]	2192	2216	120
LRR [sensitive, ls]	2394	2416	0.21
LRR [sensitive, ls]	2394	2416	4.8
LRR [sensitive, ls]	2417	2439	1
LRR [sensitive, ls]	2417	2439	23
LRR [sensitive, ls]	2440	2462	3
LRR [sensitive, ls]	2440	2462	69
LRR [sensitive, ls]	2486	2507	0.28
LRR [sensitive, ls]	2486	2507	6.6

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	58	541	8e-61
RPM1 [A. thaliana]	78	546	2e-35
Pi-ta [Oryza sativa]	78	521	3e-19
Mla1 [Hordeum vulgare].	89	548	2e-32
Xa1 [Oryza sativa]	157	546	3e-61
Pib [Oryza sativa].	186	574	1e-23
N [N. glutinosa]	232	544	1e-10
RPS2 [A. thaliana]	232	493	2e-17
I2 [L. esculentum]	1959	2541	6e-32
Xa1 [Oryza sativa]	1999	2515	4e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Zinc knuckle	979	996	3.4e-07

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	597	635

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 1989.m00204

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)