Report for 1999.m00122

 > 1999.m00122, length: 704, copies: 2 

MAAAALAGVLLLALAAVAGADTDGGDAAALGNLYSSWNSPAQLTGWSAGGGDPCGAAWMGVSCVGSAVTSISEFG

RLDPAIQANNGALLVFSVFFSCRKKGFFQAFWYGAEWHSWLPTIQSASIEDNLRCRNLAGNNFSGNLPYSISNMV

SLNYLNLSHNLLFQEIGEMFGNLTALSELDVSFNNLNGNLPISLRSLSNISGIYLQNNQLSGTVNVLSNLSLTTL

LGGNSFLNVPSSPPSTITSPPQGQPDFPQGPTTAPNIPEIPIDQGSDKKQRLRTGLVIGIVIGSMAAACGVLFAL

VLCLHNVRKSKDGGISESKDVASTFAVNIDRASNREIWDHTQQDAPVSSSVLPPMGKMTPERVYSTNSSMSKKMK

VSVTANPYTVASLQVATNSFCQDSLLGEGSLGRVYKADFPNGKVLAVKKIDSASLSLYEEDNFLEVVSSISRLRH

PNIVPLAGYCVEHGQRLLVYEHIGNGTLHDILHFFDDTSKILTWNHRMRIALGTARALEYLHEVCLPPVVHRNLK

SANILLDKEYSPHLSDCGLAALTPNPEREVSTEVFGSFGYSAPEFAMSGIYTVKSDVYSFGVVMLELLTARKPLD

SSRERSEQSLVTWATPQLHDIDALAKMVDPAMDGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQQLVRLVQR

ASMVRRQSGEDVGLSYRGPDREGGTADAI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	151	174	0.049
LRR [Pfam ls]	175	198	6.2
Ser/Thr pkinase [Pfam fs]	395	594	1.4e-39
Ser/Thr pkinase [Pfam ls]	395	671	7.6e-40

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	151	174	0.0021
LRR [sensitive, ls]	151	174	0.049
LRR [sensitive, ls]	175	198	0.27
LRR [sensitive, ls]	175	198	6.2
LRR [sensitive, ls]	199	221	0.35
LRR [sensitive, ls]	199	221	8.1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	112	214	1e-10
FLS2 [A.thaliana]	121	686	1e-46
CLV2 [A. thaliana]	132	214	7e-11
Xa21 [O. sativa]	132	483	6e-11
Pto [L. esculentum]	364	669	2e-44
Rpg1 [Hordeum vulgare]	383	672	1e-21
Rpg1 [Hordeum vulgare]	388	682	1e-26

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	280	302	in -> out
putative TM domain	280	302	in -> out

Report for 1999.m00122

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)