Report for 2023.m00116

 > 2023.m00116, length: 747, copies: 1 

MSNKQIFQVYHGPGNVRYGPTGVDLSDFIVSERGIDRPAERSVPSIKGWLMRGLRVDPQTSDITINVIVYGLRIH

RVGRYRKSRSRPNHLFTRSLEPPRRCQYREWIDTRRVLTPPSRVVQFELPEQYRVTKARFERGEGSSRRGLNPQK

DSQGSRLPVIGLKLKFEHEEGSKILASKLKKQAPDLLEVTNKMRLLQSDFSMLQAFIAQVAVDRSNDMVLEAWME

QVRLAAHEAEDIVDEYTYLVGQTEGTGSFLKKAFNQAIEVKKWRKLSAQAKLVEDRLQKISEAKNRFDISFASSG

RENTASYPSRHHHLSEYSYLNDDDDLVGNAEEMKRLIEWLCDAKKDRSVISICGMGGLGKTTLASSIYKKEEIKR

TFICRAWITVSQNHGVKNLLKKILVQLMSKTENIMDGADTMDCVSLVEQLQRYLKGRRYLIVLDDVWSREAWPLL

DNAFVKNNNGSRVVITTRIETVASLADANYELKLTLLPKQEAWTLFCQKAFSRLDDRSCPHNLKTVAERIVEKCQ

GLPLALVAIGSLLSYKEMDEHEWELFYNQLRWQLSNNPELSWVASVLNLSYNDLPSYLKNCFLYCGLFPEDYRIE

RKRLIRLWIAEGFVQDRGPETTLTDVAACYLKELASRSLLQVVNRNEYGRPKRFQMHDLVREISLTISKKEKFAT

TWDCPNSDGVTDGSRRVSLQKDGNLVQAAKCSSQLRSMLMFTEEISLSWFTDCYQSFRLLRVLCLRNCNVHK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	309	619	5.8e-101
NB-ARC [Pfam ls]	309	619	1.6e-101

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	176	740	5e-48
I2 [L. esculentum]	193	670	2e-55
Pib [Oryza sativa].	202	547	2e-14
RPM1 [A. thaliana]	219	747	7e-80
Mla1 [Hordeum vulgare].	223	745	3e-59
Xa1 [Oryza sativa]	260	738	2e-40
L6 [L. usitatissimum]	313	671	3e-16
M [L. usitatissimum]	313	593	5e-17
N [N. glutinosa]	318	672	2e-14
Pib [Oryza sativa].	321	671	6e-44
RPP5 [A. thaliana]	324	599	6e-11
RPS2 [A. thaliana]	326	671	2e-35

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2023.m00116

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)