Report for 2069.m00234

 > 2069.m00234, length: 1368, copies: 1 

MDLGYEHPAVLLSVEISEVVQKLRRSLGKSSDSFKRTTKKLDVVEDKLRFLRLDSLQRVKPAPAWLQDLNKAAQD

AKGLLDDMESEVKAPDSSISDVMNWLSSDDRNMIRMVYVISKLASACSQGKSIVDTPPLNESALGDEKEDKIASS

SVAMTRQDKSFLGDDFLIGRDEEIAMIRDMVLDNAQYVPTEITLKIREEAEKLHVPHKGWITETLHKIDMSKWTQ

QAIEVSPHPENEKSNKVEYIRHPHDSAVTYLRNPAVIPIVGISGVGKSALAKFIFDDANVREHFGDISAWVYMTD

RTDQLVTIEQIIYSFNPKDNISYMTSLDSAYSQLQDIIEGKRFLLVLDDVWNEICVLWNDLRSVLSKGAPGSVVL

VTTQLYSVANFVGTAGPVILDPLQSDDSWALLRRYAFVEPCRSLSTEGLKEIGRKISHRLHGLPLSIKVTGATLR

SQLEEADWREILNSWWWNVSDDNFAIRIISSLGSCYSALPGYLRQCFVYCSIFPRNYVFEKDKLVQMWIANGFIQ

LDSSSGVKRLEDVGGEWFYELVNRAFLQPSARKTEYIMHDLVWDFASALSSDEYHGNDNKVRGVSQDVRYLSVDM

DALDTLPDKFKTEQLRTFMLLDGSHQPSNNETHLPLSNFLCNSKSLRLLAFSSRSYKWLGRTSALSNVISSTKHL

RYLDLSFTGIAKLPNSVCSLCHLQVLGLRGCTFGKLPGDMNFLINLRHLHASSGTIAQINGIGKLTKLQELHEFH

IKAEEGHGITELSDMNDLGGSLCISHLEMVTDPAEALQANIVEKDYITALELRWSYTLPDLSKSILGCLSPPRYL

QELKLYGYSGFELPDWVGQLKHVRVVEISWCKNLNVLPPLGQLEHLQKLKLDGLPSIKDINSDICGTSNVVFWSL

EELSFEYMENWESWTYAGSSDFIRNLKKLKILSCEKLRKVPFESLGLATKEIIIKWCDPYDDTFSRYLQGLNGLT

RLEVGGSRRCKLIIPCKQLMSLEYLHIQGFGDVCIKSGLWYIKNLKNILIIDCSTVVTDSNEESAQEDKQSPTQI

DRTMHSLTHLTLGGDTMQKVGLEFVIPQTPSLRNLRLDIVQGHTSITKKWLQYLTSLQELEIYSCHALPSSLSSL

SSLRRCTLKYCHWMYSIPPNSLPGNLKELQIEECSFELEARCQNPTGDARPEGRKIELWQKRKMGEWRERKLEHG

RTKLIEMQQKNESLGIPMSWREKSPKSSKGESLYQSDKYWSRGQRMQEGHEWPRKQHMEEQSFIEKEKSSSLNEQ

AEEDESKKEPLEEWLQQSEGDQWPEREWELYSWVERKLKKELDRNKDDPSSLMKEREEWLKEEERKFHIHDSHAL

SQDNAFAFGIIYLPSALE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	223	529	3.8e-46
NB-ARC [Pfam fs]	258	529	7.1e-52
LRR [Pfam ls]	674	696	0.89

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	47	70	2.2
LRR [sensitive, ls]	47	70	45
LRR [sensitive, ls]	674	696	0.043
LRR [sensitive, ls]	674	696	0.89
LRR [sensitive, ls]	697	716	0.68
LRR [sensitive, ls]	697	716	14
LRR [sensitive, ls]	720	741	0.98
LRR [sensitive, ls]	720	741	20
LRR [sensitive, ls]	847	869	0.67
LRR [sensitive, ls]	847	869	14
LRR [sensitive, ls]	870	894	1.4
LRR [sensitive, ls]	870	894	30
LRR [sensitive, ls]	925	949	3.5
LRR [sensitive, ls]	925	949	71
LRR [sensitive, ls]	1106	1129	0.64
LRR [sensitive, ls]	1106	1129	13

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	261	978	3e-96
RPM1 [A. thaliana]	261	1055	2e-46
RPS2 [A. thaliana]	261	940	9e-29
Pib [Oryza sativa].	261	848	6e-20
Pi-ta [Oryza sativa]	261	701	4e-20
Xa1 [Oryza sativa]	261	1167	4e-68
Mla1 [Hordeum vulgare].	262	804	1e-30
Xa1 [Oryza sativa]	866	1168	3e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	66	89
putative coiled-coil	1194	1214

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2069.m00234

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)