Report for 2069.m00235

 > 2069.m00235, length: 1012, copies: 1 

MSCMVTLRVFNVEASLVHLQAVLDVAERRPVVDDNFTGWLELIKKIASEAEELLDDFEIKRIQKSQQNKVSGFLA

YMMKNLGFVDDDIYRLKTLLARLDKIASKSGNFFDLLKLNDSKEDMVGFLPEIQVVFHGREKEKDQLMSIIFPNE

AQAEHFPASRMQEETRGTATVKVVCIVGEAGVGKTALAQVIYNHPNVKKAFNQRGWVSLSQRSDSEDFIKKIFCS

FAAEQHPFDSEMGLETLQASSEHDLSRTIQNKRFFLVLDNAKDNLQREWKTVRAKLTGAAAGSIVLVTTRSEVTH

AIPGGIVITLDKIPTSVLSMILKHHAFGLTRKDSLESIGDKIAGKLHGLPLSAEVIGRLLRTKLDEDHWRNVCES

NWWNDYEDLVITNPALPSVTIALEFLRNDLKKCLGYCSMFPSSYLFDKRKMTQMWVCNSMQQHQESAYEITDIRW

LDELLNRSLIQSTVWKGKYTVNEMIKKVVASINQTGCYTIDDLHSPRQNLSNIIHMAVDKYDFEVSLDLRKQSKV

RSILFFDGQRTTMLNTALNSILPVSSSLRVLDLSCIETKMERPPDVISTCSHLRYLDLSFTGITMFPDSFCKLLL

LQVLGMRGCRFTELPRDMNKLVNLRYLYAEACTLSLIHSIGQLSKLQYLEEFAVSEKEGYRITELKDLNYLGGHL

CITNLEKVACVNEVCDARHAELSKKMYLQKLALKWNSQPATLDGCTETVSHLKPNGQLKDLEIHCYMGVKFPGWI

ADDQHFTTLRYIKFSGCKKLVELPPLGNLSHLAVLILQGLEQIKDIGKEFYGSYDRVFPSLEELTFRDMENWRRI

PRTGRIVRTEEAEEENMTCLKVHDCLAIMIDLPNHLLASTEFLRQLVVYEECKKGFKAIDYPLGFIFTPTSSGPH

LTHPKEANKAKSGVREKCAFRRASGEHHSPGQRDGPQKQPAEERRGSSPASPRHRLPRERRHGSGARRGRGRAAR

AIGLRRRVLTRDSGEGVRLAASRPSGKMQNFYFIFLF

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	113	441	1.2e-13
NB-ARC [Pfam fs]	171	297	5.6e-11
NB-ARC [Pfam fs]	328	441	9.5e-11
LRR [Pfam ls]	577	599	0.05
LRR [Pfam ls]	758	780	0.37

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	577	599	0.0024
LRR [sensitive, ls]	577	599	0.05
LRR [sensitive, ls]	600	622	0.57
LRR [sensitive, ls]	600	622	12
LRR [sensitive, ls]	623	644	0.84
LRR [sensitive, ls]	623	644	17
LRR [sensitive, ls]	758	780	0.018
LRR [sensitive, ls]	758	780	0.37

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	12	858	8e-74
Mla1 [Hordeum vulgare].	29	650	3e-17
Pib [Oryza sativa].	122	787	2e-22
Xa1 [Oryza sativa]	124	814	7e-55
RPS2 [A. thaliana]	162	819	1e-11
Pi-ta [Oryza sativa]	167	657	4e-14
RPM1 [A. thaliana]	173	804	7e-37

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2069.m00235

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)