Report for 2069.m00236

 > 2069.m00236, length: 1421, copies: 1 

MEELVEDNGWPLPAAIARVVGKLRLHLGGSSDAHKYRGTMKMLDLLEDKLSILRGESLQGVDADREEEAAAWLRQ

VKEAADEAEELVNAMEASAAAAASDSSSLLLGVKYTVGKLVSACSEVESLLPVPGLDEDGLETPGDDVAALPPGP

DQPFVVGRDEEIGVILEMILDDARFVADESVEERASADGSQISRKGWIIDALRSIDLSDQRNQPAESAAAYQKEM

GSRVKYTRVQSSTVSSMCNPTVIPIVGVGGVGKTALAQFIFDDERVREHFRGNSAWVYFTDNIRKEEPMAQIFVS

MQPEHNMLDHAFSLNSLRVQLQSVIEGKRFLLVLDDVSDEIRAMWGDLRSALKKGAPGSVVLVTTNLYSVASFVG

TTTPVFLDYLHYDDLWKLFKHHAFASYQSTEALEPIGRKIVDKVHGSPLAAKFIGASLRNCLDEAYWKRVLESWW

WNVSSCSFDIHIISSFGICHSELPAYLRQCLVFCSIFPRNYLFEKYELIQMWIANGFVELDNTTVARKLEDVAGE

WFDELVNKCFLQPTVWKAWYIMHSWVRDFAIALSSNEYQGVDCTMGNLPRSVRHLSVDMDAMNIPWTEYSIKQLR

SLILFGGFRHNNSSKGFNNIYNILEGSYDAADSISERSYNTTDKDTADNISEWSSFSFDDGEVDIVAIILKRYCD

IIGSILNRSTSLRLLSLSNLRANSATACIGDYPLEEDGIAQFVEFTTTHQMLPYLTHLRYLDFSHSGITKLPDSL

CSLCNLQVLGLRGCRFTQLPRRMNSLVGLRHLHADADTVALIHGIGQLTRLQDLYEYRVKAEDGHTLIELKDMRY

IQGSLCISDLQRVANREEAIQANLGRKEYVTCLALKWDRNQSSRGKYNLYGKELSQFDRGQKQPLQASLVEKNYT

SDISGYLMNPPEVIKPDQDMEILECLSPPRNLQTIKFFGYTGLAFPDWVVQLRYIKVIEISHCTELQVLPPFGQL

EHLRKLILHELPSMKDVSSDVYGTSNVAFKSLEILCFESMGKLENWADSQNEESFSNLQNLQINRCDNLRELPLM

SLGLAIRKLSLTGCGSYAETVFRYLQKLTSLTHLSINDCSQKLILPCQNLISLENLHLSNCKELYFEGGILRLNN

LKNLHISGCRKIISTVEEEINRLFSNWEIRLGKDQSLVLKSGLLNIAKELGTKRRELPLPGSPQKEEFMHTLQYL

TDLTMDNLSQSSDLDNFLCKLSALRTLCLHKIDVISLHQEKWLEQITSLQELEFSCCYLLRQLPSNLVTLSSLKK

LNMQSCFQIHSLPLKGLPGNLRELQILGCSPILEARCQKEDGETWVKKKRGEWHKETINEYRQKKTCEFWEGWLK

YEEEWVESATDHLNDKGEWLENEEEDWLKNNSDELENNEDVWLKSRGEDWPKIAHIPYIRVNGDIIQNFYL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	209	513	6.1e-43
NB-ARC [Pfam fs]	240	513	1.9e-47
LRR [Pfam ls]	732	754	0.031
LRR [Pfam ls]	755	777	4.1
LRR [Pfam ls]	954	976	3.2
LRR [Pfam ls]	1248	1271	5.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	732	754	0.0015
LRR [sensitive, ls]	732	754	0.031
LRR [sensitive, ls]	755	777	0.2
LRR [sensitive, ls]	755	777	4.1
LRR [sensitive, ls]	954	976	0.16
LRR [sensitive, ls]	954	976	3.2
LRR [sensitive, ls]	1032	1056	1.1
LRR [sensitive, ls]	1032	1056	22
LRR [sensitive, ls]	1102	1127	0.52
LRR [sensitive, ls]	1102	1127	11
LRR [sensitive, ls]	1248	1271	0.25
LRR [sensitive, ls]	1248	1271	5.3
LRR [sensitive, ls]	1272	1293	0.67
LRR [sensitive, ls]	1272	1293	14

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	204	1304	4e-69
I2 [L. esculentum]	246	1320	7e-73
RPM1 [A. thaliana]	247	562	4e-36
RPS2 [A. thaliana]	247	562	1e-14
Pib [Oryza sativa].	247	609	2e-13
Pi-ta [Oryza sativa]	247	606	2e-14
Mla1 [Hordeum vulgare].	248	538	2e-19
RPP5 [A. thaliana]	947	1307	8e-11
Xa1 [Oryza sativa]	973	1313	5e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	66	97

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2069.m00236

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)