Report for 2069.m00237

 > 2069.m00237, length: 942, copies: 1 

MEHHAALRAAAGDMLYGVEAALPRIRILVEATERRAISRASFAAWLQQFKDAVAEAEDLLDDLETRRIPAGAQGQ

GQQARLRHVPRAQRLKDVLAKLNRITSDATGFHDILKLADDDVGAMRSVLPVPATPPAVIGRDEEQQQLVKMILR

PGAPPCPQDGAESCSGVSVISVVGAAGVGKTTLAQLIYSDPNVKEAFLLRGWVFTSRSCSRTGLEQDIIESFASE

QEENLQRKSVSSESSLIDVVRNKKFFLVLDDVQHNLHSQWDSLRSTLARGANGSVVLLVCQSKEVANSLGATAQV

PMGYLPSPVLWRVFEHHAFGNQKRASLESIGKKVLQNLHGLPLLAEAIGRLLRQRLDKAHWQKISSSPWWLFSED

EDDVALPSVAIMSSFMQQHDGIGMKEMEKEWFDELFRRSFFQPTIWKNRYIMPDMIRKPLCSIAGKECHAASELG

EQKRRLQDYRHLAISFPDFNVHLDLRKDNKLRTILLFDGRKTIKPHEAFANILSHLSGLRVLDFSYSEAKLEKAP

DFINKFTHLRFLDLSFTGMTVLPDSLCKLHLLQVLGLRGCQFKELPRAINELVNLRFLYAEAHTVSLIYKIGKLT

NLQGLDEFLVGRMDGHKITELKNLNEISGQLCIGNLDKVASTDVVSDAELFKKRHLKKLVFRWGLTACKPLAEAD

GFMRTLAGLKPNTNLEELKIQCYMGVGFPSWMAEEQYFINLRRIHLIECKQLLTLPPLGQLPSLVVLILQGLTAI

EKIGYEFCGKGYRVFPSLKEVTFLDMPNWRKWSGIEELQDLQIPPFPQLRKVQIKNCEVLIDMPVCCLKASLEEL

EISGCNEIFACNPSCLDRLTSLVRLKIHHCLGKIYLPCRLLESIEVLNLQRCEVYFQGGKEHLMKLRRTVTNDVH

ELNLDESKAISTELLVLKLSEGYHYLSSCFLNKWNFEASSVS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	117	417	4e-13
NB-ARC [Pfam fs]	162	367	7.7e-22
LRR [Pfam ls]	533	555	0.29
LRR [Pfam ls]	715	737	6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	508	532	2.9
LRR [sensitive, ls]	508	532	59
LRR [sensitive, ls]	533	555	0.014
LRR [sensitive, ls]	533	555	0.29
LRR [sensitive, ls]	556	578	0.36
LRR [sensitive, ls]	556	578	7.5
LRR [sensitive, ls]	715	737	0.29
LRR [sensitive, ls]	715	737	6
LRR [sensitive, ls]	821	845	1.4
LRR [sensitive, ls]	821	845	29
LRR [sensitive, ls]	868	892	5
LRR [sensitive, ls]	868	892	100

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	14	877	4e-78
Xa1 [Oryza sativa]	132	912	6e-51
RPM1 [A. thaliana]	169	608	4e-23
RPS2 [A. thaliana]	169	583	5e-12
Mla1 [Hordeum vulgare].	170	644	3e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	46	67

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2069.m00237

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)