Report for 2080.m00128

 > 2080.m00128, length: 1037, copies: 1 

MSAIIRDAEQTVVQYETTRDWLKQLRGIAYEAENIIDRCRIEQERLQMFQPQECNPSSLFKCCRDVAVDYIIAND

IHELNQELESIRSESTLLHLNPVAEDQIRLDLDVAPHLEPDIVGREVENDSDNLIQLLTRDYNTTCPLFAIIGTI

GVGKTTLARKVYHKAAAMFETRLWVHVSKDLRHLTMWSDGMFSKAEIAEQQALLLSYLQDKRFLLVIDDVWGENV

WDGRLEIQAQHGAPGSRVLVTTRDERVARRMGAIHLHRVKMLNEDDGWWLLRTRAFLDEGAGNMQDMGRRIVQKC

NGLPMAIRRIGCHLRDVDHKEDEWGRVYSSDFCGISARIRSTINMSYLELPYYLKRCFLYCALYPEGSVIERQCI

TQQWIAEGFIVTQTNSTQRHSATVEEEAERCYDELLGRGLLLPENEACDVVGSKMPHLFRSFALLQSQDENFTGN

PQDIGDVFKPCRLSVTNGGVESIRNGLKKLRNLRTLLLSGGTLNDRALSDIFLKFTHLRVLDLGNTQIDCVTASL

GRMAHLRYLSFANTQIREIPGSIENLRMLRFLILRNCIRLNSLPESVGRLKNLRSLDMSGAGLNIVSFKFSQMRE

LNCLQGFLVSPSGTQNKCGWPFQELSSLSKLTSLQMLRIERELNAEGAKQSALREKRHLKELELCCSIDEQTTQI

GRAENIKDVFEELAPAPSVVSIKMANYYGHEFPSWLSFPGLSELQRLTIDGCSHCSQLPSLGQMSNLKYLAIIDS

NLSATIGPELRGKPDNGVAFPKLEQLLISEMSNLKSWSGIEEGDMPSLVDFRLERCPKLDSLPRWLEHCTALRSL

RIDHADSLKTIENLPSLRELEVHRNKKLKRILNLESLEDLKVVHCLVLKVVHGVPSLRAVHSDDRNSTELPQWLQ

PQQPFVLKRLDIIGTEELLDKCSSASSTYWSAIQHADHVFAYLPDDTFYFSYTKSNSNFHRSARSLARSLYSSQS

FVMPSITPSNDVIVPEENIRRNKRIEIGRSRSQSWVRTELFAVLLFVAAHLFFLSTTHASSH

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	100	390	7.7e-47
NB-ARC [Pfam fs]	151	390	1.2e-49
LRR [Pfam ls]	530	552	0.23
LRR [Pfam ls]	841	863	6.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	482	506	1.4
LRR [sensitive, ls]	482	506	29
LRR [sensitive, ls]	507	529	0.73
LRR [sensitive, ls]	507	529	15
LRR [sensitive, ls]	530	552	0.011
LRR [sensitive, ls]	530	552	0.23
LRR [sensitive, ls]	553	576	0.6
LRR [sensitive, ls]	553	576	12
LRR [sensitive, ls]	577	599	0.55
LRR [sensitive, ls]	577	599	11
LRR [sensitive, ls]	718	740	0.69
LRR [sensitive, ls]	718	740	14
LRR [sensitive, ls]	741	764	2
LRR [sensitive, ls]	741	764	41
LRR [sensitive, ls]	797	820	1.6
LRR [sensitive, ls]	797	820	33
LRR [sensitive, ls]	841	863	0.3
LRR [sensitive, ls]	841	863	6.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	4	809	6e-74
RPS2 [A. thaliana]	19	813	6e-33
Mla1 [Hordeum vulgare].	21	673	3e-42
Pib [Oryza sativa].	104	585	2e-33
Pi-ta [Oryza sativa]	108	584	2e-30
Xa1 [Oryza sativa]	114	813	8e-40
RPM1 [A. thaliana]	145	832	4e-44

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2080.m00128

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)