Report for 2080.m00129

 > 2080.m00129, length: 965, copies: 1 

MDGILQKGSELGLLPIDQEILNERSEISLEVIPDDYIVGDIENEANKLIDILTDRKSAKTLVAIVGGSGTGKTTL

AWKIHDDHRTRNAFGMIVWVSVFNDFDDIGLLSAIVTAAGGNPKEAKNRTQLELMLASMLKGKRFLLVLDDVRGH

QIEENSLEAHWHVCGHGSRILITTRDENVATKLNASYIHQVKELSFQNCWSLLCCNACLDENLHGNTLRNIGIMI

IQKCKKIPMAVKIIGAVLRRKEQTQESWQRVYEFEGWSFDDLRGDVQGLTGAIYLGYHDLPSHLKQCLLYLSLFP

EGSTIRQQFVTQLWISEGLIDRQDDCSAEKIAEEYYEELISRNFLQLETGNRDITRCTMHDQIRSFLQFFVKDKI

CSGEVKPGTNGTSSEGLRHVWISGTSTTTNLEETVTSLKTVILYKNPLRNQGLDKLFKGLKYLHVLDLGGTEIRY

IPRTLEFLVHLRLLNLSLTRITELPESISYLRNLQFLGLRYCNWLHTLPKGIGNLHRLQTLDLRGTSLHQVLPSL

VNLKQLSTLHGFTVNRTPIPEDDPSGWPLENLKDLNALRSLQILKMEKVSDFSRVKEAMLEMKSQLKDLEICCSN

DDRLAEAREDDSRTLKQIFDSLSPPQCLKSLKIVSYYARHFPNWLPCLTNLQRLVLSDCKFCEHMPDLSKLNQLK

FLTITGCSKLLTVEQESTGVTQAFPKLEQLHLKDMPKLVSWIGFASGDMPSLVKFCLESCPKLKCLPEGLKYSRV

LRSVQIRHADSLEVIQDLPVLKELNVQACNELKIVSNLPLLEVLTIRRCPRLDDVSGVHYLSHVCITDKELRKLP

DWLSIHAPVLQTFNIVGVSELLDRLLPNGEDWEIIRQIDKVYANLLDESPFFTYTKSSGDFHVDQRIGEINKPPV

VLGHGTAVGGLSIPDHSVEISSQIGVSRVPMNRISTLRSTREIWLVQTLFIFFATVFLLLLVFLD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	22	147	7.3e-15
NB-ARC [Pfam ls]	22	325	1.2e-43
NB-ARC [Pfam fs]	167	325	3.4e-30
LRR [Pfam ls]	460	482	0.86
LRR [Pfam ls]	483	506	2.5
LRR [Pfam ls]	507	529	4.7
LRR [Pfam ls]	650	672	1.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	412	436	0.36
LRR [sensitive, ls]	412	436	7.3
LRR [sensitive, ls]	437	459	0.38
LRR [sensitive, ls]	437	459	7.9
LRR [sensitive, ls]	460	482	0.041
LRR [sensitive, ls]	460	482	0.86
LRR [sensitive, ls]	483	506	0.12
LRR [sensitive, ls]	483	506	2.5
LRR [sensitive, ls]	507	529	0.23
LRR [sensitive, ls]	507	529	4.7
LRR [sensitive, ls]	650	672	0.091
LRR [sensitive, ls]	650	672	1.9
LRR [sensitive, ls]	673	697	3.1
LRR [sensitive, ls]	673	697	65
LRR [sensitive, ls]	726	746	3.6
LRR [sensitive, ls]	726	746	73
LRR [sensitive, ls]	770	795	4.9
LRR [sensitive, ls]	770	795	100

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
N [N. glutinosa]	16	788	6e-15
M [L. usitatissimum]	17	854	1e-12
RPM1 [A. thaliana]	17	761	6e-41
RPS2 [A. thaliana]	26	742	4e-41
I2 [L. esculentum]	32	802	2e-76
RPP5 [A. thaliana]	34	803	1e-12
Mla1 [Hordeum vulgare].	37	563	3e-32
Pib [Oryza sativa].	42	756	6e-36
Pi-ta [Oryza sativa]	47	569	2e-19
Xa1 [Oryza sativa]	51	789	2e-38

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	943	964	out -> in

Report for 2080.m00129

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)