Report for 2151.m00119

 > 2151.m00119, length: 1814, copies: 1 

MAVVLGAFVPDTAAQWRSVVKGEVARQLGVEAEARKLGARLEKVGAAVRDAEARVARGSDAAARWLARVRAAAYE

ADVAVDRCRATARRLTRGREQQLQQHNQALPWLLSTCCDVAEPRRDIAADLKNVSQKLKSIIKEQRQLQLQASVA

DHTDDHPRKILRHRKSEPTDIDIVGTAMEDDARRLVRRLTQPDSGGVVAIYGPDGIGKTTLAKVVFDSERVKRRF

ETRSWVHVSRGCVEDGKREAALLSQVVEAVVDGGGATTGAETVAELERMLAALVANRRFLLVLDEVRNGGEWEEL

VRRLLERGGRGSKVLVTAVTAGVARDMGAGHVHRVNRLGEDDGWALLRVAACVADDGGAALRGVGRRIVGKCGGV

PLAIRAVAGVLRTREAIAEEWAVVDASPAWKVKGLPDDAMKPLYLCYDDMPCHLKQCFLYCSLFLSDFAVDRRSL

VQQWIAEGFVQIRGDAGVEEVAEEYYDELIGRNLLQPAEADRHGCVERCTMHDTLRSMAQVLSHGENLTGDAQAQ

RLPSDGDAPFAPRHVSFPRNHLAAIPEEVLKLEGVRTLLLQRNPLTIGSNIFTRLLYLKVLDLTETAMEVIPETL

GNLLYLRFLNLSQTRIKALPETICNLWSLKFLLLRECKALHVLPKGIEHLKGLRDLDLTGTVIKDAAFRVGHLRN

LTSFRCFTVTSKEARTVQDTAQDRSGWPLDELKNLCQLRTLHVKRLEKATSQSKAAEVALHAKTGLRELELSCSG

TVKTLQIPTVVRNIEDIFQELKPPRGLESLKIANYFGTKFPTWLSSTCLPNLLRLNITGCNFCQSFPLLGRLPEL

RSLCIADSSALKDIDAQLMDTDNSHQVPFPKLEDLHLQGLHNLETWTSIEAGALPSLQALQLESCPKLRCLPDGL

RHVTSMTELRIVDMESLEAVENIAALRELSVWNTPNLKKICNLPSLEDLDICHCPSLETVDNINRLQEVHIFDHE

LQEMPRWIQAHASKLCSLEFMSTTELLKRCLIDGPDWPVIKDIAQVHGYSNDSSYIYYSKSLKIFEGSASIRESR

DAERSVADSDKVDDASIESRNVDRDAEIDGFFSSKLVETGTARSEDNVPDRNMERFMTRSTGRRLHKLEEVPEGD

EDEEEEGADPVVLIPDDTTKSDTVLEKLHPVVTHDHNDKAGSKMKRDPPAKTAPGTSVIQSAATMCHKLVREGSQ

AISITETDQDLSLDSFRSKEHASSKQKVDTSGSVIEKVKEGRYKSANINDRKHIERVHDSANKMSTTSVEKSIPE

TVKPMKATKNNSKATDYHGTENKSPDSLACSRQTISQIEKDVSDADKAANHPSSAITENRLHKANEIDASATAIK

TEVSKKSAGANICNTLNPADSQTVHATDTAQDLPSSLLHDDPHLPDVGSSTSTSISDNCIQTESSNTSLSANLNN

EEPKAKGVTKTTCASGPCKLTATLDCKQQTTNPSDDTDASMKKMASNISEKVVKTLKRPHAETVNITRSSSLPID

PKSHVIDTTAATKKLEATLKNRSSRNAAPGLADDKTPVYNDSHQAPKVYTAIWADTDTDTLKARFLSTMQHYRRM

ASHRRRRHRKHGSRTKWSIWPVLVAILLIISVAQLLFTFWMYRKLMNQNSKVGKEATSNSDCPQFFSPSFSLLTF

ALESFSVVDEEVKPISPPPEKEEEEAISPPQPPKREIIRVTTKAIVKEKASAFSSVGSSSSSGKSGAGGGALNAA

ALFRRFNSSAPVPRAEAAGDGDGGVRLEIEDIAAGDRRRETRKRKSPLDASGGGWWHGEMEGVDGEEVGWTDDMW

EGMGSITLGGLEWH

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	159	465	3.3e-45
NB-ARC [Pfam ls]	159	465	1e-44
LRR [Pfam ls]	605	627	2.6
LRR [Pfam ls]	881	904	5.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	559	581	1.4
LRR [sensitive, ls]	559	581	33
LRR [sensitive, ls]	582	604	0.39
LRR [sensitive, ls]	582	604	9.2
LRR [sensitive, ls]	605	627	0.11
LRR [sensitive, ls]	605	627	2.6
LRR [sensitive, ls]	628	651	0.43
LRR [sensitive, ls]	628	651	10
LRR [sensitive, ls]	652	677	0.51
LRR [sensitive, ls]	652	677	12
LRR [sensitive, ls]	740	762	3.6
LRR [sensitive, ls]	740	762	84
LRR [sensitive, ls]	801	823	0.46
LRR [sensitive, ls]	801	823	11
LRR [sensitive, ls]	856	880	1.9
LRR [sensitive, ls]	856	880	44
LRR [sensitive, ls]	881	904	0.22
LRR [sensitive, ls]	881	904	5.1
LRR [sensitive, ls]	945	967	0.35
LRR [sensitive, ls]	945	967	8.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	678	2e-34
Pi-ta [Oryza sativa]	10	632	3e-26
RPM1 [A. thaliana]	18	923	1e-48
I2 [L. esculentum]	35	957	1e-80
RPS2 [A. thaliana]	59	897	3e-36
RPP5 [A. thaliana]	172	993	1e-10
Xa1 [Oryza sativa]	173	1039	4e-45
Pib [Oryza sativa].	197	911	9e-43

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	1592	1614	out -> in

Report for 2151.m00119

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)