Report for 2189.m00139

 > 2189.m00139, length: 827, copies: 1 

MGIPQWFPRWAQPSMRYVVTFTTQVPMRRILSKKIMAINTRLEEIIQNKDRYKMDDVNKGIEVTWKASTSISESN

SELDDLQQGNLTLYEEHQEELEKALTPTDQELQKNDNRPIVVSVSGKSGVGKTTLVRNVYNIMKKKNCFDVHAME

SFAPHLTAPNILHQIVQQLTEDNKNCPRSMVHEMLATALRDKKYLLVIDGEVSRTEWKNIITMLTTLAVGSTGNR

IVHIRFDRPEQSSLYYHHHIRLEPLENNVVMKLFHKRLRNQDKQGDAGGPMVLKLKKLLQFDAQYQKLEEYREDI

CKITEGLPLAVVLLSGLVQTKEFPHEWTEVFKYLSSKKSKRLDNLLSLCFDDLPHELKCCYLYFAAFPPNVVVEA

RNLVCMWMAEGFLTPRVGKTLEKVGYIFLNELISRNLVNLVLVDDNSTTGTMFISIQNKVHEFLQSEAHEASFLE

VHSGDDIPTLTSARRLSLQNYTDKYAALANPLPKLRSIFSQFEQEPKEQEPKGDQTRQCCTPPQQWITNKKQKDI

RSHIKGLLQGSEFLRVIDLQGIEIGDELPHAIGSVVHLQYLGITSCSLTVIPPSIGSLSGLQTLDVRETNVRKLP

LNFWLMIKTLRHVFGFTLKLPKQIGSMKHMQTLDSIELDNCEKDLIGTVGKMVHLENLFVWNITTGNMEALFAAL

SKLENLRNLALHGHIIPSTVFITISLRRLKSMKLQGKLKFLYEITGMDVCLPNLSMLSLEKTKVSQGFISKLAEL

PSLETLALYSESYKDEHLLFSSIGFVSLKKIKLDVPTTLKTIEIEQGALHILKEFDILSQRPHVKIIAERRIKKL

IV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	76	393	2.3e-13
NB-ARC [Pfam fs]	114	148	1.4e-06
NB-ARC [Pfam fs]	291	393	6.3e-23
LRR [Pfam ls]	562	584	0.25

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	538	561	2.9
LRR [sensitive, ls]	538	561	90
LRR [sensitive, ls]	562	584	0.0081
LRR [sensitive, ls]	562	584	0.25
LRR [sensitive, ls]	585	607	0.77
LRR [sensitive, ls]	585	607	24
LRR [sensitive, ls]	728	751	2.5
LRR [sensitive, ls]	728	751	79

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	28	811	8e-44
RPS2 [A. thaliana]	31	734	6e-17
Mla1 [Hordeum vulgare].	88	658	1e-24
Pib [Oryza sativa].	97	807	2e-26
Xa1 [Oryza sativa]	107	686	7e-18
I2 [L. esculentum]	116	806	3e-22
Pi-ta [Oryza sativa]	116	645	1e-22

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2189.m00139

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)