Report for 2340.m00185

 > 2340.m00185, length: 1492, copies: 1 

MDTGIIVARWVVGKALNPVLDGLVEAWAASQKLGPNVDALKMELLYARAMLNNVRGREIHNTDLNELLQKLRDLA

YNADDVLDELDYFRIQDELDDTSEAAAEHAKGCVSDLFLNAHHTAKAAGKLLGFSSSCSSCATNNGPGDSITAAC

CGSPHNTIHAIGKRLCFSTSLVDDCDHDYGCVHDERDHVKGKSTPKLKFDRVGLSKKMKIIVEQLQPVCAKVTAI

LNLELMGSHLSIESSTAKSRPITAPTSIEPTLYGRDAVMKRIIDSITQGTCCEEYLTVLPIIGPGGIGKTTLIQH

IYNSQQVQNHFQIMVWTCVSQSFSVDKLIEEIKEKLPSVEGEKKGSAEELIVQRLKSKRFLFILDDIWKCESDDW

KRLLVPLRKGQTKGNIIIVTTRFLVVTETVKTSDNKIQLEGIDDEAFWELFLAYVFGPEKSKNDKDLLCIGKDIV

KKLKGSPLAAKTVGKLLSNHLDRVHWMRVLDSKEWELQAGDHDIMPALKLSYDYLPFHLQQCFSYCALFPEDYKF

NNKELIRFWIGLDILHSESQNKAFEDIALSNIDSLVSHGFFKREETDGHPCYIIHDLLHNLALKVASLECVSLHS

SNVKSVEIRPSIRHLSIITDGANDTDGITDENFKSELIKLKKRLKVENVQTLMIFGEVDKSFIGCFHDLFKEASA

LRVLYFPKMPFAVGSILDEFTTLVHLRYLRLGTTIGNNFHLPINLSRFYHLRILDLEKWDNCFHLPGDISNLAKL

HNFLVPGYPIHSNISNVGKLQFLQELKGFQVNRKDVGFELKQLGYLMELRELRIDNLEKVHTKEEAAEAKLLSKT

RLRKLELNWKQGRTSTNAFNEDQILEKLQPHSSLQELSIHGHGGSSCPKWLGTELSVKFLETFRLKNVVWNILPP

LGEVFLVGGPGEESIGQKTSQNFRSLKRLELVKLPNLRKWVAKEIFPTFFSVLEVLIVRKCNELAELPFSYHTYC

TSEEDVKATCFPRLRELEIHNCPKIVSLPPIPYTQTLCSVNITDVGTGLESLVYSSKSSKLEIKGNKDLKVLDDN

VFASRNLHKLQNLTIEGFPPLEERHLQMLTSLKRFSLFSSSIAFNPTVERSDVEWRLSIENLMIQDWNGSGKELT

QLLFHLPKLSLLSLGGCRKKTLLSIALTQQQTSAQVESTQVTASNHRQQQKAEDLDLLEEEEVTQLDVDGEDEDD

DRLLLTNSLEQLWIVNYKELILVSHPLPIGHHNKEEEGTGGGWGLQALCSLRQLGIRGCPLLLSAYEAPACLFPS

SLQYLQITGPMEGVQMLDLSNLTSLTKLFIEDCGEYLRKGLLPLLAQGQLSNLIVYKTYGLFAGVLDSILRGAQE

EQEQLHLLEHSSKLRVLETDDLAGILVKPICRLLSSSLTNLTLQGNSEVKRFTNEQEEALQLLTFLQDLKFIHYD

KLRCLPAGLHRLTNLKRLMIMNCPSIQSLPKDGLPGSLKYFIVRDNEKLVKQCKKLKKTNPEIELIL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	240	545	2e-66
NB-ARC [Pfam ls]	240	545	6.2e-67
LRR [Pfam ls]	988	1010	6.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	592	616	3.1
LRR [sensitive, ls]	592	616	63
LRR [sensitive, ls]	988	1010	0.3
LRR [sensitive, ls]	988	1010	6.1
LRR [sensitive, ls]	1387	1411	6.2
LRR [sensitive, ls]	1387	1411	130
LRR [sensitive, ls]	1439	1460	0.51
LRR [sensitive, ls]	1439	1460	10

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	9	1464	1e-129
RPM1 [A. thaliana]	195	968	1e-39
RPS2 [A. thaliana]	218	969	2e-30
I2 [L. esculentum]	230	1308	3e-80
Pib [Oryza sativa].	252	750	2e-24
Pi-ta [Oryza sativa]	252	732	3e-21
Mla1 [Hordeum vulgare].	257	804	8e-31
Xa1 [Oryza sativa]	1199	1484	5e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2340.m00185

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)