Report for 2340.m00188

 > 2340.m00188, length: 1125, copies: 1 

MGELQVSSAHSAVDSLLGRLIRILEDEARLLGGVRGDVQFIKDEMESINGFLLHVLHLDRPDHQLQGWTRQVKDL

ARDCDNCVDVYMQRLAGAGSGGSARRLLRLLTLPARRRIATRIRELKSRACDVGERRRRYGVVVPRTRNNAAAAA

AARRGGQRGLAKRQLSEAGGGDHHADASSAGNTTKQDHRRRALLEEETPANLFAGETDTLVGWLLAAADEHRRPK

VISIIRPDDEELVAAAIDPVKRALDDPRILELFQIRQWHSGQSHPGWVYQDMMTQILPMIQHMHRALGGMVSDYD

KRNKRRYTRLKKKKKRIVVSNFSRKNLGSKGNKFPVGTTFDEVKEFIGGTASDKEEEEEEEEGFLQAAAMEVHEG

FAMDVAKIISETMASEMGFHQGMTFQEMMENFLKDKSYLIVLDDVPDESLWRGIESAFPGNTAHSAILLTTRSPA

VAYSCSPHDRVFPPLDHLIDFFHAKAVSLVENYPSNGNLDEVIRSILSKCASNSTDMCIRAFLHVLYANPNRNRE

ELQGLCDSLHDSHGLMLDENMQQILMFWYNDLPVHYKSCLTYLSLFIQDDGSSSNSTMMIRRTSLVRRWAAESIN

TERNGQTALDETERCFGVLLAKRFVLERDIGASGKIKSCAVNGLISKFITKVAREDNFVDADLQPDFAHRVSIWN

RSQLQQVLAELQASPRPSSSSCWNMRKHYDQPLDDLTIFLKSLPAFSRLGLLKVLDLEGCDGLKDHHLENICKLF

QLRYLNLRRSKLTKLPKKIQNLQQLETLDIRETTVSSFATKSLVLPMLKHLLSGYTQQQNEQTEKFSTVRMPRGI

GSMTNLQVLCHVVVSGIEDELMDIGKLLQLRKLGVVFHGDQNSFKHLVQAIEKLHKSLISLSIRVEVPDGCENFP

DMNMAEPTAFSYPKLLESLNICGIRCGLPRWIKELSRLAKLTLCDTHLGEQDMAVVGNLKALRYLRLRCRSYVQS

KLTLGEKQFQHLKVLLIHGEDITDISFSKNPKLEKIVWSFREMKSISGIERLPSLRSFELHGDCNPDKVEIALKD

HPNHPDLEHHGNRQGQGDAAGSLDADAASTCASVSAPNHPDVKHPDNRQGHGDDSAASTSASASASAPKHIQSIT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	311	605	1e-06
NB-ARC [Pfam fs]	406	452	1.4e-06
NB-ARC [Pfam fs]	544	605	2.2e-05
LRR [Pfam ls]	751	773	0.042

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	726	750	1.6
LRR [sensitive, ls]	726	750	32
LRR [sensitive, ls]	751	773	0.0021
LRR [sensitive, ls]	751	773	0.042
LRR [sensitive, ls]	774	796	4
LRR [sensitive, ls]	774	796	81
LRR [sensitive, ls]	996	1019	3.1
LRR [sensitive, ls]	996	1019	62

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pib [Oryza sativa].	365	1035	2e-36
Pi-ta [Oryza sativa]	379	861	1e-26
RPM1 [A. thaliana]	402	1036	6e-22
Mla1 [Hordeum vulgare].	404	965	1e-30

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2340.m00188

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)