Report for 2348.m00181

 > 2348.m00181, length: 1122, copies: 2 

MAGLLASGIIKWTTNKLSSLVSPQIVSSSSDEQSASFRDLRDLQRTMARIQRTLDAMDEHNIRDEAERLRLWELQ

QLAYDAQDAVDEYRYELLRRRMEDQSNQRQSSRSRKRKRKGDKKEPEPSPIKVPVPDDLAARVRKILEKFNEITK

AWDDLQLNESDAPIREEAYDIKISTTPHVGDFDIVGREEDKENIIEILISDEAAQANMSVVSIVGMGGLGKTTLA

QMVYNDERVSRYFQLKGWVDVSEGHFDVKAIARKIIMSFTRNPCDIEDMGNLQNMITAQVQDMKFFLVLDNVWNV

QKEIWDALLSLLVGAQLGMILLTTRDETISKMIGTMPSYDLSFLTSEESWQLFKQMAFGFIDQHMDQQFEGFGRK

IVGKCGGLPLAIKAIGSSLRGETNEETWKDVSESDQWGLPAEEDRVLPALKLSYDRMPVQLKRCFVFLSLLPKGY

YFWKEDMINLWMCLGLLKQYCTGRHENIGRMYFDDLIQRAMIQRAESDEKLECFVTHDLIHDLVHFVSGGDFLRI

NTQYLHETIGNFRYLSLVVSSSDHTDVALNSVTIPGGIRILKVVNAQDNRRCSSKLFSSSINVKIPTETWQNLKQ

LRALDFSHTALAQVPDSIGELKLLRYLSFFQTRITTIPESISDLYNLRVLDARTDSLRELPQGIKKLVNLRHLNL

DLWSPLCMPCGIGGLKRLQTLPRFSIGSGGWHSNVAELHHLVNIHGELCITGLRRVINVDDAQTANLVSKNQLQI

LRLDWSDGVCPNNCSHPSSQNDVATPDPEHEEEIFESLRPHKNIEELEVVNYSGYKYPSWFGASTFMHLAKIILC

QQSCKFLPPLGELPRLRILSMECMTDVEHVRQEFRGNITTKAFPAVEELEFQEMLKWVEWSQVGQDDFPSLRLLK

IKDSHELRYLPQELSSSLTKLVIKDCSKLASLPAIPNLTTLVLKSKINEQILNDLHFPHLRSLKVLLSRSIEHLL

LDNQNHPLLEVLVISVCPRLHSIMGLSSLGSLKFLKIHRCPYLQLPSDKPLSTQLQRLTITKCPLLADWLEVQIS

HQQCQLHESKDAWYEEQQALNELNDASEDEHREEFGLLYEDDNGEDNDEQDHEQSEDEEIQYGSDDSSEEDE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	168	472	2.7e-67
NB-ARC [Pfam ls]	168	472	7.7e-68
LRR [Pfam ls]	600	622	6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	600	622	0.19
LRR [sensitive, ls]	600	622	6
LRR [sensitive, ls]	623	645	0.63
LRR [sensitive, ls]	623	645	20
LRR [sensitive, ls]	646	668	0.93
LRR [sensitive, ls]	646	668	29
LRR [sensitive, ls]	895	915	3.7
LRR [sensitive, ls]	895	915	110
LRR [sensitive, ls]	917	939	0.4
LRR [sensitive, ls]	917	939	12

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	38	687	6e-37
I2 [L. esculentum]	40	926	1e-118
Pi-ta [Oryza sativa]	73	677	2e-22
Xa1 [Oryza sativa]	98	1015	7e-69
RPS2 [A. thaliana]	140	675	7e-29
L6 [L. usitatissimum]	183	513	1e-12
M [L. usitatissimum]	183	611	1e-15
N [N. glutinosa]	183	715	7e-15
RPM1 [A. thaliana]	184	673	2e-48
Pib [Oryza sativa].	184	674	2e-26

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	38	59

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2348.m00181

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)