Report for 2348.m00189

 > 2348.m00189, length: 1047, copies: 1 

MAGLISSGIIKWTASKLSSLVSASPGASASNEQSSALRDVRTLQRTMARIQRTLATTDEHSIRDASERLHLRELQ

QFAYDAQDAIDLYKFELLRRRMDDPNSHGDGGSSRKRKHKGDKKEPETEPEEVSIPDELAVRVRKILERFKEITK

AWDDLRLDDTDTTMQDEEHSMLPLPTTPYVDEPTIFGRDEDKEKIIKMLLSVGGANEGDVSVLPIIGMGGVGKTA

LVQLVYNDRRILNRFDLMGWVHVSENFDLKSIMRKIIMSFTKKPCQMTQMDQLQYMLIEQVVGRKFLLVLDDVWN

ERKDIWDALLSAMSPAQSSIILVTTRNTSVSTIVQTMHPYNVSCLPFEESWQLFKQMAFLHQDESMKTDFEVIGR

KIVQKCAGLPLAVKAIASALRFEENEEKWNDILESEQWELPTTEDTVLPALKLSYDQMPIHLKRCFVFFALFPKR

HVFLKENVVYLWISLGFLKRTSQTNLETIARCLNDLMQRTMVQKILFDGGHDCFTMHDLVHDLAASISYEDILRI

DTQHMKSMNEASGSLRYLSLVVSSSDHANLDLRTLPVSGGIRIFQVVNSMDDNRRYFSSFFKNNRRCFSKLFSHH

INLTIDNELWSSFRHLRTLDLSRSSMTALPDSIRGLKLLRISKLPESICDLLNLKILDARTNFLEELPQGIQKLV

KLQHLNLVLWSPLCMPKGIGNLTKLQTLTRYSVGSGNWHCNIAELHYLVNIHGELTITGLGRVTKVDDAQTANLI

NKEHVQTLRLDWSDGFYSSECDHNSSHIDVKATPELAEEVFESLKPTSNLEELEVADYFGYKYPSWFGGSAYSQL

AKITLWKQGCKFLPTLGQLPQLRKLVVIRMEEVERIGQEFHGENSTNRFPVLEELEFENMPKWVEWTGVFDGDFP

SLRELKIKDSGELRTLPHQLSSSLKKLVIKKCEKLTRLPTIPNLTILLLMGNLSEEIHNSLDFPMLQILKEWIEW

QQSLIDKEDKQQPEFDNASYDQEALGALSDNSEDDVEVFNEDEDDDFYDEMLEVGQSSGTAINDDDGSNDAV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	169	473	4.1e-77
NB-ARC [Pfam ls]	169	473	1.1e-77
LRR [Pfam ls]	615	637	0.06
LRR [Pfam ls]	653	675	6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	615	637	0.0019
LRR [sensitive, ls]	615	637	0.06
LRR [sensitive, ls]	653	675	0.19
LRR [sensitive, ls]	653	675	6
LRR [sensitive, ls]	901	921	1.1
LRR [sensitive, ls]	901	921	35
LRR [sensitive, ls]	923	945	0.75
LRR [sensitive, ls]	923	945	24

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	40	932	1e-112
RPS2 [A. thaliana]	61	939	6e-30
Mla1 [Hordeum vulgare].	64	703	7e-43
Pi-ta [Oryza sativa]	64	705	3e-26
Xa1 [Oryza sativa]	99	946	1e-72
RPM1 [A. thaliana]	179	680	4e-46
Pib [Oryza sativa].	181	681	1e-30
M [L. usitatissimum]	185	524	5e-18
N [N. glutinosa]	185	631	1e-14
L6 [L. usitatissimum]	209	523	1e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2348.m00189

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)