Report for 2425.m00272

 > 2425.m00272, length: 902, copies: 1 

MELATGALPSVIAKLGDLLVGEYNLQKAVKGEIRFLQSELESMQGALAKVSATPADQLDPQDKIWARDLRELSFD

IEDTIDAFVVRDIGNDNGDGEAKPRGISKLIDRSVGLFRKAKARHGIASEIMDIKSRVVEVHERRRRYEINIGAG

GGDKTATIDPRLFTRYTDEKELVGIVSQTPDLKKLFMDIIYQLDKEKYKDLNEKPLDLDEVQLINELREFLQQKR

YFIVMDDIWDISIWKMIKCALPDNDVGYKIITTTRISEVAEKAGGVYKLKHLSLNNSRRLLYGRIFGNCEDTEKY

PDEELAEVSERILKKCAGVPLAIITMASLLACKARNKMEWYKVYNSVGTGLENSLDVKNMRKILSFSYYDLPPHL

RTYLLYLSVFPEDYKIEKDRLIWMWVAEGFIQCGKQGRSLFELGESYFNDLVNRNMIQPIYDMYTDMVSECRVHD

MVLDLICSLSSEENFVTILNGCDLSQGYSLKYVGNLFHLRYLGLRDTDIREAPEEIGNIQFLQTLDLRANPICDL

PLNIVKLRHLTSLCFDGFARVPDGIGSLTRLEHLAYVLIDCATVGILEELGNLTELRVLCIIFWDGWNDKLVGLL

HKLQKIQRLSIDVCMNNVRKNMGGLDAWVAPRHLVALDTEKICWFSSLPAWMTNPSHVPNLRSLSIAVREIRQAD

VETLGRLPALRDLQLQVDHEELGIRGVVLVIGSAGSFACLVCCGLWGFVGPAVFRRGAMPRLRTLRSRFSVREAI

AVAGAGDDGLDLGLGSLPSLQEVNVSLDCEGASEEEVNELKAALRRATKIHPNHPSISIDGEKEEEDTYLISIYH

TWHIGCALGMVAVFHAAPHRVEAKHVDHSVLPSVPKAWCPKPLMVVAPANAGTYPVAIFLHGCNMVNSWYEQWRK

QD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	103	411	5.4e-28
NB-ARC [Pfam fs]	176	411	9.5e-42
LRR [Pfam ls]	511	533	6.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	488	510	0.65
LRR [sensitive, ls]	488	510	14
LRR [sensitive, ls]	511	533	0.32
LRR [sensitive, ls]	511	533	6.7
LRR [sensitive, ls]	660	683	6.1
LRR [sensitive, ls]	660	683	130

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	809	1e-113
Pib [Oryza sativa].	66	535	9e-43
Xa1 [Oryza sativa]	120	638	8e-19
I2 [L. esculentum]	121	583	3e-29
RPM1 [A. thaliana]	147	559	2e-42
Pi-ta [Oryza sativa]	147	810	1e-51
RPS2 [A. thaliana]	221	666	3e-21

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	702	724	out -> in

Report for 2425.m00272

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)