Report for 2455.m00118

 > 2455.m00118, length: 360, copies: 1 

MDPLSPLNLVLPLAILLSSLLAPPAIAMPSIEEQAGALIAWKATLQTQEPLQSWDRKAWPCHSWRGIGCGARQGK

FVITKISLRGMRLRGSLEVLNFSALTMLTSVDLSHNKLTGRIPWSEVGNLAILEDLRLGINKLSSSISNSIGNLA

KLSVLILWGNQLSGHIPNNLGNLTKLSLLDLCHNQLSEHIPQELGYLVNLKGLRLCDNMLSSSIPNNLENLTKLT

VLSLYKNQLSGHIPQELGYLVNLKNLSLYSNNFTGSIPNCLGNLTKLTDLALFENQFSGHISQELGKLVNLENLE

LFKNMLTGSIPNNLGNLTKLIDLSLFENQLYGHIPQELGYLVNLKNFFALFKQPHKFDPE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	102	126	0.97
LRR [Pfam ls]	151	174	0.11
LRR [Pfam ls]	175	198	1.1
LRR [Pfam ls]	199	222	0.3
LRR [Pfam ls]	223	246	0.15
LRR [Pfam ls]	247	270	0.021
LRR [Pfam ls]	295	318	0.061

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	77	101	4.3
LRR [sensitive, ls]	77	101	89
LRR [sensitive, ls]	102	126	0.047
LRR [sensitive, ls]	102	126	0.97
LRR [sensitive, ls]	127	150	2.8
LRR [sensitive, ls]	127	150	59
LRR [sensitive, ls]	151	174	0.0051
LRR [sensitive, ls]	151	174	0.11
LRR [sensitive, ls]	175	198	0.053
LRR [sensitive, ls]	175	198	1.1
LRR [sensitive, ls]	199	222	0.014
LRR [sensitive, ls]	199	222	0.3
LRR [sensitive, ls]	223	246	0.0073
LRR [sensitive, ls]	223	246	0.15
LRR [sensitive, ls]	247	270	0.001
LRR [sensitive, ls]	247	270	0.021
LRR [sensitive, ls]	271	294	1.2
LRR [sensitive, ls]	271	294	25
LRR [sensitive, ls]	295	318	0.0029
LRR [sensitive, ls]	295	318	0.061
LRR [sensitive, ls]	319	342	1.2
LRR [sensitive, ls]	319	342	26

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	1	345	2e-45
Xa21 [O. sativa]	10	327	2e-35
CLV2 [A. thaliana]	32	345	4e-26
Cf-9 [L. pimpinellifolium]	45	344	6e-19
FLS2 [A.thaliana]	74	338	8e-30
Cf-9 [L. pimpinellifolium]	76	240	3e-13
Cf-9 [L. pimpinellifolium]	78	345	3e-23
Cf-9 [L. pimpinellifolium]	78	311	3e-22
Cf-9 [L. pimpinellifolium]	78	350	6e-22
FLS2 [A.thaliana]	78	345	4e-39
FLS2 [A.thaliana]	78	347	4e-31
Xa21 [O. sativa]	78	338	7e-33
Xa21 [O. sativa]	78	335	1e-28
Xa21 [O. sativa]	78	313	7e-25
CLV2 [A. thaliana]	81	347	7e-24
FLS2 [A.thaliana]	81	346	6e-31
CLV2 [A. thaliana]	82	334	6e-20
Xa21 [O. sativa]	87	348	1e-30
CLV2 [A. thaliana]	95	338	9e-21
FLS2 [A.thaliana]	96	341	3e-31
FLS2 [A.thaliana]	98	336	2e-30
Cf-9 [L. pimpinellifolium]	100	345	1e-26
FLS2 [A.thaliana]	100	313	4e-26
Xa21 [O. sativa]	100	263	7e-12
Xa21 [O. sativa]	103	355	6e-27
FLS2 [A.thaliana]	106	349	4e-44
FLS2 [A.thaliana]	111	339	8e-46
Xa21 [O. sativa]	131	345	5e-32
FLS2 [A.thaliana]	144	346	1e-22
Xa21 [O. sativa]	155	347	2e-29
Xa21 [O. sativa]	223	344	5e-17
FLS2 [A.thaliana]	227	349	3e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2455.m00118

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)