Report for 2458.m00114

 > 2458.m00114, length: 709, copies: 1 

MPTPPSPCLFFLFLLFFMWSSHSHLGAASDADALLALKSALDRSDRLPWRRDTAPALCSSWLGVRQCSQPPRDRR

VTKLVLENLNLTGVLTATLLAPLSELRVLSLKSNALTGPIPDALPAALPNLKLLYLSANRLQGRIPPTLALLHRA

TVLVLSSNLLHGEIPTSLTTLPRLTSLLLDDNRLNGILPPLPQPTLRLLNVSANRLSGEIPSVLATKFNASSFLA

NADLCGPPLRIQCAAPTAPAAAAAFTPLPPPRSNRSRRAKNAGIVAGATVAGVVVLGILVAAAVMASRRGRNKRV

AGDVDKGAMPEEEEEQQQQQPQAQPREEINASASASASVASERRGGREFSWEREGIGKLVFCGGVAEMYSLEELL

RASAETLGRGEVGSTYKAVMETGFIVTVKRMREPAAGAAELGRRAEELGRLRHPNVVALRAYFQAKEERLLVYDY

YPNGSLFSLLHGSHQNPLLTRTTVCRCRQAGSSSRTSSKGKPLHWTSCMKIAEDVAAGLVHLHQSPPAGIVHGNL

KPSNVLLGPDFESCLTDYGLVPTLLPSHADLASSTSVLYRAPETRTAHAFTPASDVYSFGVLLLELLTGKAPFQD

LMEMHSDDIPSWVRAVREEETESGGESASAGGTEEKLGALISIAAACVVADPARRPTTPEVLRMVREARAEAMSS

SNSSDRSPARWSDAVQVQMGMGVPRDQGELGGLT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	100	123	3.9
LRR [Pfam ls]	125	148	0.054
LRR [Pfam ls]	195	219	4.3
Ser/Thr pkinase [Pfam fs]	376	662	3.4e-26
Ser/Thr pkinase [Pfam ls]	376	665	6.7e-25

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	75	99	2.6
LRR [sensitive, ls]	75	99	55
LRR [sensitive, ls]	100	123	0.19
LRR [sensitive, ls]	100	123	3.9
LRR [sensitive, ls]	125	148	0.0026
LRR [sensitive, ls]	125	148	0.054
LRR [sensitive, ls]	149	172	0.96
LRR [sensitive, ls]	149	172	20
LRR [sensitive, ls]	173	192	0.52
LRR [sensitive, ls]	173	192	11
LRR [sensitive, ls]	195	219	0.21
LRR [sensitive, ls]	195	219	4.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	9	212	1e-12
FLS2 [A.thaliana]	74	211	2e-12
FLS2 [A.thaliana]	76	674	2e-30
Xa21 [O. sativa]	76	461	1e-10
FLS2 [A.thaliana]	85	214	2e-12
Rpg1 [Hordeum vulgare]	359	662	9e-20
Rpg1 [Hordeum vulgare]	377	663	4e-16
Pto [L. esculentum]	382	662	2e-20

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	10	28	out -> in
putative TM domain	267	289	in -> out

Report for 2458.m00114

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)