Report for 2474.m00117

 > 2474.m00117, length: 502, copies: 1 

NLSSNSLSGKLPDSMAKLNSLSTLRNGNHLTIPTMPGSSPTPDTIPGSPPTPAAAVAAPRSGASHPPIYVIPATP

HGAAQGDPPRHGKKVSPAKAAGFSILAAGSLTIAVVLIVFAVSKRRRETSLHGGFLRGVEMSTPDWSGKPSGQSA

VVKVDKEQSTVAEEKDTKGSISSYQKNVQESLQNHPLQFKFTIFTVASLQQYTNSFSEQNLMRQTLFGKIYLAEQ

QDIKFAVLKLDEAMARMPVDEFLRMVQRISELQHPNIEELAGCCVEHGQRLLVYKHFSDETLDDMIHLKKLASSD

DPAAKITLPWDARVAVALEAAKALEYLHEGGQRQVVHQHFRPEHVLVDGEMRVRVSGCGLAAAVKSGLDLQSECW

LDALSYEPPEAAAAPWTDKGDVYSFGVVMLQLLTGRRPYDGARPRGERRLVAWASSRLHDLTALEKMADPRLGTP

ATVRSMSRFADVISRCTQQEAEFRPAMSQVVQDLRRALQPARDACGQQSCSN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
Ser/Thr pkinase [Pfam fs]	217	337	0.00026
Ser/Thr pkinase [Pfam ls]	217	486	2.3e-10
Ser/Thr pkinase [Pfam fs]	390	416	0.0047

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	160	486	1e-15
Pto [L. esculentum]	172	489	4e-27
Rpg1 [Hordeum vulgare]	194	482	2e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	95	117	in -> out

Report for 2474.m00117

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)