Report for 2474.m00127

 > 2474.m00127, length: 1404, copies: 2 

MMSSIAVAAASAGLRGLAQPIIGNLSSFASRYVGVDMAREMVDLETIILPQLNLIIASAESQPQHVNNIVQKCLQ

RLKVELSQAEDLLDEHEYDLLKHRMKQKKLSVFSVHGQCQGPISNPFIWVLSNISSLSPHNTKMLNHLKEVKSIL

EKAKNFLGVLSVATQVSADTAGSRVIQDTTTFREEKVFGRDKDRDSIINLLFDPAMVGGGNSNIKGYSSIAIVGA

GGAGKTTLLQYICSDDRVQNNFHVIWVCMSHKLDIRKHTTEVIESLATEETPKIQNLDTLQRKLKNLLLEKREKE

LLLVLDDVWFEQRHHSEWEQFLAPLISAEFNKGIRILVSSRSKELPSVLNCRKTVSLEDIEENDFLTFFRYYSLG

HVLIGNEELEEELQGIGDDIAKKLRRSPLEAKAVASRLSRMLDVEIWKHARDSKQLDGNIMENLLWSYQRLDPQV

QRCFLYCSIFPKGYMFHIDEIILLWEAEGFVSSNGRSERAEGITRQYFYELSLSGFFGKQSHGKDSHVGYRMHDL

FHDLAENLSIDDGYRIETEENTEIPQFVRHISISVPSLERHAASICKLEQLHTLIFFNPVADIGKFLKPMLKKLK

KLRVLSLCFFSSYTLPKHIGKLKHLRYLNLERTSISKLPKSSCKLYHLLVLKMNKKVPKTLPKKANNLISLRRIN

GPLKDVCNVGMLTSLEDMKEFQVKKEKGYEIGQLGSLTKLRGHLHIMNLENVQNRNAAKDAKLQEKANLDALRLV

WNHDTYKNNNVDLEVLEGLEPSSRLNELAIEGYRSTSYPKWLSGCSQSLRSLELLNCTFLENLPSNLQCFARCRS

LALLNLTGLKRLSPLPENLTSLKFGGCSSLCFISKEEEEHGVNPAREKALQPLTSSTELETLTEILRLDGSELEQ

FQACFQELQYPVSTISARRRDVAQLVLPLTLRRLELSSCNITDQALSECLRSLTSLKDLALLHITTLSALPSKQV

MENLSMLSSVGITSCRSLCSVAGLGAIASLEKFAISFCPSLELSDRRILPSQLKEVTVRGCTIHDGFLHDDLPFL

VNLEISKCRTPSVLQVGAWPSLKCLKLCDCLDVCFLVGLPALESLQEVQLVLPNLGADSFTGCKGNWRSLRVRTS

SLLHDLSELEGFAPPMLLTIEGCQEPDFSLEGIQNLSSIIGLSFMNCKVQSISAMKDLASLETLAFFDCPLLISL

PELPPSVQYLDIIGCQILEKSCRSRRGEDRRKISQIPHVERKNHGRQPGKYLHYIWGEVTTPHGGLQEVSGEYSM

IKAGGALKMVDDERVMMESLLCLPPASRRRHHPHLLRRPPGRQPPLRHAPRLIQLMPNCTVTAAWRRDQAIPSGR

ICAIQPTTNATVLQSNRLIVAKKLTAGCTRRVVRCAIIEKIALLGAQGSVVGTL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	171	486	1.3e-29
NB-ARC [Pfam ls]	171	486	2.2e-28
LRR [Pfam ls]	624	647	1.3
LRR [Pfam ls]	930	954	1.5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	624	647	0.063
LRR [sensitive, ls]	624	647	1.3
LRR [sensitive, ls]	798	821	1.4
LRR [sensitive, ls]	798	821	28
LRR [sensitive, ls]	825	848	1.5
LRR [sensitive, ls]	825	848	32
LRR [sensitive, ls]	887	909	4.6
LRR [sensitive, ls]	887	909	96
LRR [sensitive, ls]	930	954	0.072
LRR [sensitive, ls]	930	954	1.5
LRR [sensitive, ls]	1027	1054	6.5
LRR [sensitive, ls]	1027	1054	140

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	52	1219	2e-81
RPM1 [A. thaliana]	83	793	4e-25
Xa1 [Oryza sativa]	135	1101	1e-80
Pib [Oryza sativa].	173	674	1e-21
Pi-ta [Oryza sativa]	186	715	2e-17
Mla1 [Hordeum vulgare].	187	716	7e-24
RPS2 [A. thaliana]	220	665	2e-15
Xa1 [Oryza sativa]	553	1234	4e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	278	301

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2474.m00127

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)