Report for 2482.m00174

 > 2482.m00174, length: 978, copies: 1 

MVGGSRLFLLLLLPLLLLLLGAGCRDGRRCAAAAAQTQRLPQQEVEALKGIARKLNKMDWDFSVDPCTGSKTWVN

ASDSNSYPKSSYPNFPVSNLTCDCSFKNNTECHVISLELMRQNLSGVLPEEVVNLTYLTNLSLQGNRISGTVPKE

LGRMPFLKSINLEGNQLEGHIPPEFGNIISLERFFISANDITGELPSTFSRLTNMTDLDMQGTLMSGPIPPEISL

LNNLTELRVTDLSGPSMKFPPLQNAQHLTKVVLRNCSIYGEIPPYLGQMQYLILMDLSFNKLTGQIPQNFDRMVA

LQLQYLDVSFNNFTGNPPNECQQANVNMVSSFSSSNDNLLQPCLRKNLPCMDKPRYSSLFINCGGKSVEVNGNIY

EDDSSRIGTSTFVLSNDRKWAYSSTGDFVGNPDADYIARNTSELTLDHPELYTEARLSPLSLKYYGVCMENGEYS

VELHFAEIVFTEDHTFSSNGKRIFDVFIQGTKVLKDFNIQDEAGGVHRVITKTFTTNITDNTLEIHFYWAGKGTT

GVPDRGVYGPLISAISVIQLAACLIVILALILCYIKFFRKKNLKGNGLQFFYHGRKTDTSDLQTRTQYFFSLKEI

ESATKNFDPANKIGEGGFGPVYKGTLANGTTVAVKKLSSQSSQGNREFLNEIGIISALRHPNLVRLFGCCIDGEQ

LLLIYELLENNSLGRALFGRGDHQLKLDWPKRYNICLGTAKGLCYLHEESTLKIIHRDIKPSNILLDERLQPKIS

DFGLAKLNDDRGRMSTRIAGTVGYMAPEYATRGCLTCKADVYSFGVVTLEIVSGMSNTSSMSDDEYLHLLDWAER

LKQEGRLLEIVDQRLGSHYSQEEALRMLNVALLCTNTSPVQRPRMSSVAQLLPIQSIHEQQPNGVVLRAIERSFD

LAAEQYGEWLPPIFKLPFFKALGRLLFGGQVEKTCNIITVQCKLVSALVNLKKKEKVHSRSLNLSSSYNTVLEPQ

NRI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	132	155	0.65
LRR [Pfam ls]	156	179	0.39
LRR [Pfam ls]	180	203	1.6
LRR [Pfam ls]	302	325	0.42
Ser/Thr pkinase [Pfam fs]	607	804	4e-52
Ser/Thr pkinase [Pfam ls]	607	879	1.8e-49

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	132	155	0.031
LRR [sensitive, ls]	132	155	0.65
LRR [sensitive, ls]	156	179	0.019
LRR [sensitive, ls]	156	179	0.39
LRR [sensitive, ls]	180	203	0.078
LRR [sensitive, ls]	180	203	1.6
LRR [sensitive, ls]	204	227	1.9
LRR [sensitive, ls]	204	227	40
LRR [sensitive, ls]	252	275	0.65
LRR [sensitive, ls]	252	275	13
LRR [sensitive, ls]	276	299	0.46
LRR [sensitive, ls]	276	299	9.6
LRR [sensitive, ls]	302	325	0.02
LRR [sensitive, ls]	302	325	0.42

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	93	346	2e-25
FLS2 [A.thaliana]	93	319	1e-21
CLV2 [A. thaliana]	95	315	6e-12
Cf-9 [L. pimpinellifolium]	100	331	3e-15
Cf-9 [L. pimpinellifolium]	102	319	4e-15
Xa21 [O. sativa]	103	329	1e-21
FLS2 [A.thaliana]	107	340	1e-22
FLS2 [A.thaliana]	108	318	9e-19
Cf-9 [L. pimpinellifolium]	109	340	8e-11
CLV2 [A. thaliana]	109	294	3e-12
CLV2 [A. thaliana]	109	323	3e-12
Xa21 [O. sativa]	109	431	5e-23
CLV2 [A. thaliana]	111	318	5e-12
FLS2 [A.thaliana]	111	338	3e-17
CLV2 [A. thaliana]	112	315	2e-13
CLV2 [A. thaliana]	112	316	2e-13
FLS2 [A.thaliana]	112	873	6e-60
FLS2 [A.thaliana]	120	315	5e-21
Rpg1 [Hordeum vulgare]	590	900	2e-30
Pto [L. esculentum]	593	873	5e-55
Rpg1 [Hordeum vulgare]	595	887	4e-32

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	24	in -> out
putative TM domain	537	559	out -> in

Report for 2482.m00174

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)