Report for 2500.m00121

 > 2500.m00121, length: 953, copies: 1 

MSINNADSRVTRIPDYSSVVYFIQRWKPAPTHTHTHYRSPQFSQTAVAATARMAGGVGEALVSAVLKEVLGKLGS

AVGEQIVMRWNLKQDLESIKSTLGMLQAVLRDAERRSVSDEGASLWLKRLKNAAYDISDMLDEFEAKLSELLLGR

NKEKEEILALLESDNIENLLVIPIFGFGGIGKTTLAKLVFNDDRTQTFDLRVWIYVSPNFDLKTIGRSIISQIKG

QSDCLDDLQSISNCLEEILDGKSCLIILDDLWENSCFQLGELTLMLSSFKAESRLRIVVTTRNEEVARKICTVAP

YKLKPLSDDHCWTLFRQSAILSSCTFQGGDKNVLEEIGWEISKKCKGVPLAAQSLGFILRTKDVEEWKNVRDSDV

WDGSSPEDVVLPSLKLSYYQMPPYLKICFSYCSTFPKGCEIYSDDLIQQWISLGFIQERPNKHISLEKIGEQCVM

GDELLLMDNGKEYNSGEGNCRLPKSFHRLGELQYLNLSRCLSLNLMVDINAVCCLTKLQYLNLSRCSSLIHLPET

IRGLKDLHTLDISGCQWIEIFPKSICEITSLKFLLIQGCSPWLEKRVRESQFKNDMLALPKFIVQRAAFGMCSNI

SRLQSVHPAELEIECLENVTSIGEVDVVNLTYKSALSKLALAWTPAAERFVEDEDLLRKLQPPDTLKVLQIQGYM

ATSFASWMMNLASRLPYLVRIEMVDLPRCEYLPPFGQLQHLELLILRRILSLRKLGGEICGGNGAFRKLREFTLV

KMDNLNEWITKVSANGEFMFPSLHKLEISQCPILRLNPCLPRALEWRIEASDQIIADFYHTGSSSSLVLSKMHIR

SCRLLPNDWKLLQFLPDLQVLELTHCWFYELPKSIGYLTTLRSLRIDGCDSMTKLSKWLVSLSLLHELIITGCLN

LVYLPAFVQKLSALEKLEINDNDALQRWCRNSDSWISENGIKNKVNAYNILCK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	131	436	3.9e-49
NB-ARC [Pfam fs]	147	436	2.2e-50
LRR [Pfam ls]	507	530	0.068
LRR [Pfam ls]	842	864	3.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	481	506	1.4
LRR [sensitive, ls]	481	506	29
LRR [sensitive, ls]	507	530	0.0033
LRR [sensitive, ls]	507	530	0.068
LRR [sensitive, ls]	531	554	1.5
LRR [sensitive, ls]	531	554	32
LRR [sensitive, ls]	772	795	0.56
LRR [sensitive, ls]	772	795	12
LRR [sensitive, ls]	842	864	0.16
LRR [sensitive, ls]	842	864	3.4
LRR [sensitive, ls]	865	888	1.3
LRR [sensitive, ls]	865	888	26
LRR [sensitive, ls]	889	912	1.7
LRR [sensitive, ls]	889	912	35

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	86	921	5e-65
RPM1 [A. thaliana]	115	446	1e-25
N [N. glutinosa]	124	415	5e-12
Mla1 [Hordeum vulgare].	132	564	2e-29
Pi-ta [Oryza sativa]	140	437	7e-18
Xa1 [Oryza sativa]	146	437	1e-42
RPS2 [A. thaliana]	147	431	9e-18
Pib [Oryza sativa].	147	559	3e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2500.m00121

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)