Report for 2553.m00126

 > 2553.m00126, length: 933, copies: 2 

MAEAVILLAVKKIGVALGNEAINQATSYFKKFVTQLTELQGSMGRIKRELRLMHEFLSRMDVRNRNNQTYEIWVE

EVRMLVHRIEDIVDDYLHLVGHKQDTGWGTYLKKGFKRPNVLFSLNRIASSIKDAEANLVHLFQAKERWVWMAGG

RATGSKSSSYIIETSRHLANISRSLDEDLVGVDENIRKLHEWLTSDELQREVIALHGMGGLGKTALAANVYRNER

EKFECHAWVSISQTYSIKDVLKCLVTELDLKKKIQGNIGDMDTATLQNELKKFLMDQKYLIVLDDVWVPETVNDL

FSIFVSNLKGSRVLVTTRIDGVAHLAFPDKRITLEPLSEKKSWELFCKTAFPRDKNHECPTKLTVLAQQIVSKCE

GLPLAIVSVGRLLFVRDKTEEEFRRIQNQLDWELINNPSLEHVRNILYLSYIYLPTHLKSCFLYCSMFPEDYLIT

RKKLIRWWVAEGFIEERGGNTMEEVAEEYLKELVHRNMLQLIEMNGFGRIKSFRMHDIVRELAIDLCRKEHFGCS

YNCENKHGKFLEGKDERRVVIHKLDKHINQAILNECHSLRCLITLDEATPPSPCLLHLVADKCRYMSVLELTGLP

IEKVPDAIGDLFNLRHLGLRGSKVKHLPNSIEKLSNLLTLDLNETEIQEVPNGIVKLKKLRHLFVEKMNELYGRE

FRPRTGVRIHKGLEKLNELQTLQGLEVQDEVSLRRLGELRQMRSIRIWGVKESYCESLCESLQQMEFLSFLSVNA

SGKEEVLKLDGLNPLPPNLRKLNLRGILAEAGMLLGSPAAGDQNNHSLYSVHLSWSQLIEDPLPSLSRWSSLTDL

MLTRAYVGEQFVFHQGWFPNLKELVLRDMPDLKRLEIHDGAMTSLQDLTLVNLSGLTEVPSGIELLSTLKNLGFW

EITQDFLAALRQCHRIHHMQWWYSVRGETDGAL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	163	469	6.9e-86
NB-ARC [Pfam ls]	163	469	1.9e-86
LRR [Pfam ls]	613	635	0.3
LRR [Pfam ls]	636	658	1.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	590	612	2.5
LRR [sensitive, ls]	590	612	59
LRR [sensitive, ls]	613	635	0.013
LRR [sensitive, ls]	613	635	0.3
LRR [sensitive, ls]	636	658	0.059
LRR [sensitive, ls]	636	658	1.4
LRR [sensitive, ls]	869	892	1.1
LRR [sensitive, ls]	869	892	26

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	1	911	1e-115
I2 [L. esculentum]	45	897	6e-55
Mla1 [Hordeum vulgare].	48	767	4e-59
Pib [Oryza sativa].	52	325	1e-14
Pi-ta [Oryza sativa]	67	663	6e-44
N [N. glutinosa]	163	860	5e-11
Pib [Oryza sativa].	165	897	9e-59
L6 [L. usitatissimum]	177	520	1e-17
M [L. usitatissimum]	177	891	8e-18
RPS2 [A. thaliana]	177	885	1e-33
Xa1 [Oryza sativa]	202	743	3e-37

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2553.m00126

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)