Report for 2623.m00144

 > 2623.m00144, length: 857, copies: 2 

MDSGRWISAMVSSVGWKAGDPVLRRYGHATIQAYRRTLHVRLLWLVDNGPWLHLSNLTTTDYGLASFWLYELKKA

LTDADALLENWRCEILRAESIGSRGTATKVRRTFSGVLDPLKVIPRHSKEFDVALQEELADVFVSIVGMGGIGKT

TLAQMVYDDDIVQQHFPVRLWVTVSEDFDTTTILQGIVGPSIQGTSLLQLHVREVLCGKQFLLVLDGVSRFNAEK

WDRLKISLECCGLGSAVLMTTRSENKSSTSRAYYLGKLADEYVWSIAKQIAFVKEEEGQDLVHIKEAVVTISDGI

PLSAAILGGLLRSRLYCELDDWLVSWADACEERSVWRIELHGEWCQSDAQREDIVFLAIELSYKHLPACIKGCFA

FCSLFPRTHKIDKDMLIQLWMANDLIPYDDAMDLEAKGSWIFDELVSRCFFQVTKRAQPSQSNRTKWRMHDLVHD

TAVLISNVEFTTVLSSVMFGSPHVQSLHHMSIVSCRNKVTCIPLLPAPNLPNLRTLLSLEEQYPLYEWNVDFSKC

KSLRVLDLHGFHSSQVMLPSRFLEHLRYLDLSNSWITSIPDDVVYLYNLQTLRLSECCYLKQLPKDLRKMKSLRN

LYLDGCFRLENVPLNLGQLKDLHILTTFIVGTDDGCGIGQLKGLNLEGQLEIYNLKNVKRIEDVKGVNLHTKENL

RHLTLCWGKFRDGSMLAENANEVLEALQPPKRLQSLKIWRYTGLVFPRWIAKTSSLQNLVKLFLVNCDQCQKLPA

IWCLKTLELLCLDQMKCIEYICNYDTVDAEECYDISQAFPKLREMTLLNMQSLKGWQEVGRSEIITLPQLEEMTV

INCPMFKMMPATPVLKHFMVEGEPKLCSSYVL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	101	406	5.5e-34
NB-ARC [Pfam fs]	138	314	1.1e-26
NB-ARC [Pfam fs]	353	406	2.6e-14
LRR [Pfam ls]	550	572	0.2
LRR [Pfam ls]	573	596	0.2
LRR [Pfam ls]	597	620	1.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	550	572	0.01
LRR [sensitive, ls]	550	572	0.2
LRR [sensitive, ls]	573	596	0.01
LRR [sensitive, ls]	573	596	0.2
LRR [sensitive, ls]	597	620	0.098
LRR [sensitive, ls]	597	620	1.9
LRR [sensitive, ls]	733	755	1.2
LRR [sensitive, ls]	733	755	24

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pib [Oryza sativa].	98	825	1e-21
I2 [L. esculentum]	101	829	5e-78
RPM1 [A. thaliana]	130	833	3e-35
RPS2 [A. thaliana]	130	835	4e-29
Mla1 [Hordeum vulgare].	139	676	4e-22
Xa1 [Oryza sativa]	141	846	2e-54

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2623.m00144

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)