Report for 2647.m00118

 > 2647.m00118, length: 930, copies: 2 

MEENIGKLDNTIKNLEVRKNEIQIRLSISEGKQETCNPEVTEWLQKVAAMETEVNEIKNVQRKRKQLFSYWSKYE

IGMQAAKKLKEAEMLHEKGAFKEVSFEVPPYFVQEVPTIPSTEETECNLKEVLQYLKDDNVGILGIWGMGGVGKT

TLLRKINNHFLGVTKENYGFDLVVYVVASTASGIGQLQADIAERIGLFLKPGCSINIRASFLLSFLRRKKFLLLI

DDLWGYFDLAEAGIPYPNGLNKQKVVLATRSESVCGHMGAHKTIFMECLDQEKAWRLFKEKATEEVISSDVRIES

LAKEVAEECGGLPLALATLGRAMSTKRTRHEWALALSYLKKSRIHEIPNMGNTSHIYTRLKLSYDYLQDKQIKYC

FLCCSLWPEGYSIWKVALIDCWMGMGLIEYDTIEEAYDKGHSIIEYLKNACLLEAGYLEDREVRIHDIIRDMALS

ISSGCVDQSMNWIVQAGVGIHKIDSRDIEKWRSARKISLMCNYISELPHAISCYNLQYLSLQQNFWLNVIPPSLF

KCLSSVTYLDLSWIPIKELPEEIGALVELQCLKLNQTLIKSLPVAIGQLTKLKYLNLSYMDFLEKIPYGVIPNLS

KLQVLDLYGSRYAGCEEGFHSRSHMDYDEFRIEELSCLTRELKALGITIKKVSTLKKLLDIHGSHMRLLGLYKLS

GETSLALTIPDSVLVLNITDCSELKEFSVTNKPQCYGDHLPRLEFLTFWDLPRIEKISMGHIQNLRVLYVGKAHQ

LMDMSCILKLPHLEQLDVSFCNKMKQLVHIKNKINTEVQDEMPIQGFRRLRILQLNSLPSLENFCNFSLDLPSLE

YFDVFACPKLRRLPFGHAIVKLKSVMGEKTWWDNLKWDDENSPLLLFPFFKASETRIASLRPELDTSVASSPKAF

FTKRQPYLSSSIRYTSFLKSMFEAEEFSSL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	102	408	1.3e-73
NB-ARC [Pfam fs]	133	408	1.3e-73
LRR [Pfam ls]	505	529	0.014
LRR [Pfam ls]	576	600	0.87

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	505	529	0.00073
LRR [sensitive, ls]	505	529	0.014
LRR [sensitive, ls]	530	552	0.84
LRR [sensitive, ls]	530	552	17
LRR [sensitive, ls]	553	575	0.73
LRR [sensitive, ls]	553	575	14
LRR [sensitive, ls]	576	600	0.044
LRR [sensitive, ls]	576	600	0.87
LRR [sensitive, ls]	762	784	8
LRR [sensitive, ls]	762	784	160

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	1	875	1e-106
I2 [L. esculentum]	12	611	3e-32
N [N. glutinosa]	119	777	1e-18
Pi-ta [Oryza sativa]	121	403	7e-11
Xa1 [Oryza sativa]	124	452	1e-24
L6 [L. usitatissimum]	131	451	9e-12
Pib [Oryza sativa].	136	581	2e-17
RPM1 [A. thaliana]	138	787	5e-30
Mla1 [Hordeum vulgare].	139	605	4e-21

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	1	23

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2647.m00118

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)