Report for 2683.m00156

 > 2683.m00156, length: 454, copies: 2 

MAASVAVFVCLLSVAAAAASMDPAEREALFLVMEAVSSDRDWRSESPDPCGAPWPGLECKPAAGDAAAALLRVTR

LDFGVEPNPSCKDTAAFPPLVFSSLPHLQSLFFVGCFKNPAANTSLVLPPAANLSTSSLQQLSIRANPSLSGVMP

PQLATLRSLQVLTISQNGLIRGEIPQGIGELTSLVHLDLSYNSLTGPVPSEISELKSLVGLDLSYNSLSGAIPSR

IGELRQLQKLDLSSNNLTGGIPVSIANLSSLTFLALSSNGLSGHFPPGLSGLRNLQCLIMDNNPMNVPLPSELGG

LPRLQELRLAGSGYSGQIPAAFGQLASLTTLSLEDNNLTGEIPPVLTRLTRMYHLNLSNNGLGGAVPFDGAFLRR

LGQNLDLSGNAGLCLDDRMVVRGVGVGVGACHAGGGGDGPLAPGGVTGAAATVRGSVDGYPFRLLGHACLVVACL

VSLN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	158	182	1.8
LRR [Pfam ls]	183	206	0.027
LRR [Pfam ls]	207	230	0.38
LRR [Pfam ls]	231	254	0.0023
LRR [Pfam ls]	255	278	0.14
LRR [Pfam ls]	327	350	0.0053

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	133	157	1.2
LRR [sensitive, ls]	133	157	23
LRR [sensitive, ls]	158	182	0.092
LRR [sensitive, ls]	158	182	1.8
LRR [sensitive, ls]	183	206	0.0014
LRR [sensitive, ls]	183	206	0.027
LRR [sensitive, ls]	207	230	0.019
LRR [sensitive, ls]	207	230	0.38
LRR [sensitive, ls]	231	254	0.00012
LRR [sensitive, ls]	231	254	0.0023
LRR [sensitive, ls]	255	278	0.007
LRR [sensitive, ls]	255	278	0.14
LRR [sensitive, ls]	279	302	1.2
LRR [sensitive, ls]	279	302	23
LRR [sensitive, ls]	303	326	4.7
LRR [sensitive, ls]	303	326	92
LRR [sensitive, ls]	327	350	0.00027
LRR [sensitive, ls]	327	350	0.0053
LRR [sensitive, ls]	351	374	0.87
LRR [sensitive, ls]	351	374	17

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	94	369	7e-34
FLS2 [A.thaliana]	94	271	1e-22
FLS2 [A.thaliana]	118	385	1e-35
FLS2 [A.thaliana]	122	376	2e-40
Xa21 [O. sativa]	122	389	3e-37
N [N. glutinosa]	129	357	2e-12
Cf-9 [L. pimpinellifolium]	131	385	1e-20
Cf-9 [L. pimpinellifolium]	132	367	1e-21
Xa21 [O. sativa]	132	343	3e-19
Xa21 [O. sativa]	132	376	2e-31
FLS2 [A.thaliana]	133	366	6e-30
Cf-9 [L. pimpinellifolium]	134	388	1e-19
FLS2 [A.thaliana]	134	389	2e-33
FLS2 [A.thaliana]	136	367	4e-33
Xa21 [O. sativa]	136	357	5e-32
CLV2 [A. thaliana]	141	385	8e-28
CLV2 [A. thaliana]	141	391	2e-18
FLS2 [A.thaliana]	142	385	1e-31
CLV2 [A. thaliana]	144	367	1e-25
Cf-9 [L. pimpinellifolium]	153	366	2e-18
FLS2 [A.thaliana]	170	367	9e-29
Xa21 [O. sativa]	170	382	2e-25
CLV2 [A. thaliana]	184	385	1e-18
Xa21 [O. sativa]	184	367	6e-22
Xa21 [O. sativa]	208	367	3e-23
Xa21 [O. sativa]	259	376	6e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2683.m00156

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)