Report for 2685.m00127

 > 2685.m00127, length: 1353, copies: 2 

MGLPPAPWAVAAAAAAGYRQPAMDSGIIGSTIGIFMQVIFDKYLSSKLEQWADRANLGGEFQNLCRQLDMAKAIL

MTLKGSPVMEEGIWQLVWDLKSSAYDAEDVLDELDYFRLMEIVDNRSENKLAASIGLSIPKALRNTFDQPGSSLF

PPFKKARPTFDYVSCDWDSVSCKMKSISDRLQRATAHIERVAQFKKLVADDMQQPKFPNSRQTSSLLTEPEVYGR

DEEKNTIVKILLETKFSNIQNRYKSFLVLPVVGIGGVGKTTLVQYVYNDLATITCFEVRAWACVSGFLDVKQVTI

DILQSIDEEGHNQFISSLSLNNIQTMLVKKLKKRKFLIVLDDVWSCSNWELLCAPLSSGTPGSKIIITTRHHNIA

NTVGTIPSVILGGLQDSPFWSFFKQNAFGDANMVDNLNLIGRKIASKLNGIPLAAKTIGKLLHKQLTTEHWMSIL

DSNLWELRQGPEDIMPVLLLSYQHLPANIQRCFVFCSAFPKDYSFCEEELIFSWMAHGFIQCMRRDKTLEDTARE

YLYELASASFFQVSSNDNLYRMHDLLHDLASSLSKDECFTTSDNLPEGIPDVVRHLYFLSPDHAKFFRHKFSLIE

YGSLSNESLPERRPPGRPLELNNLRTIWFMDSPTISLSDASDDGFWNMSINYRRIINLRMLCLHHINCEALPVTI

GDLIHLRYLDLRFSDIAELPESVRKLCHLQVLDVRSCKNLVKLPTGVNNLISIRHLLVDASSKLLAGYAGISYIG

KLTSLQELDCFNVGKGNGFSIEQLKELREMGQSLAIGDLENVRNKEEASNSGVREKYRLVELNLLWNSNLKSRSS

DVEISVLEGLQPHPNLRHLRIINYRGSTSPTWLATDLHTKYLESLYLHDCSGWEMLPPLGQLPYLRRLHFTGMGS

ILSIGPELYGSGSLMGFPCLEELHFENMLEWRSWCGVEKECFFPKLLTLTIMDCPSLQMLPVEQWSDQVNYKWFP

CLEMLDIQNCPSLDQLPPLPHSSTLSRISLKNAGIISLMELNDEEIVISGISDLVLERQLFLPFHNLRSLKSFSI

PGCDNFMVLPLKGQGKHDISEVSTTMDDSGSSLSNISELKICGSGISEDVLHEILSNVGILDCLSIKDCPQVTSL

ELNPMVRLDYLIIEDCLELTTLKCMKTLIHLTELTVLRSPKFMEGWKNLVEEAEGSHLRITASLKRLHIDDLSFL

TMPICRTLGYLQYLMIDTDQQTICLTPEQEQAFGTLTSLKTLVFSECSYLRSLPATLHQISSLKSLHLSSCESID

SLPHLGLPGSLERLFIAGCDLLRDKCVEEAVSSELSDAEGLLTAAKKETNPSGDVLFHVFLIYVGSWNLDPLLVA

VKC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	206	515	1.6e-61
NB-ARC [Pfam ls]	206	515	8.6e-62
LRR [Pfam ls]	680	702	2.4
LRR [Pfam ls]	976	998	8.2
LRR [Pfam ls]	1262	1283	9.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	680	702	0.12
LRR [sensitive, ls]	680	702	2.4
LRR [sensitive, ls]	703	726	0.64
LRR [sensitive, ls]	703	726	13
LRR [sensitive, ls]	808	836	5
LRR [sensitive, ls]	808	836	98
LRR [sensitive, ls]	866	888	7.7
LRR [sensitive, ls]	866	888	150
LRR [sensitive, ls]	976	998	0.41
LRR [sensitive, ls]	976	998	8.2
LRR [sensitive, ls]	1188	1209	6.7
LRR [sensitive, ls]	1188	1209	130
LRR [sensitive, ls]	1238	1261	1.4
LRR [sensitive, ls]	1238	1261	28
LRR [sensitive, ls]	1262	1283	0.47
LRR [sensitive, ls]	1262	1283	9.3
LRR [sensitive, ls]	1285	1311	7.9
LRR [sensitive, ls]	1285	1311	160

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	43	1297	1e-117
RPM1 [A. thaliana]	59	762	3e-50
Xa1 [Oryza sativa]	170	1294	1e-113
L6 [L. usitatissimum]	198	1280	1e-15
M [L. usitatissimum]	198	562	4e-11
Pib [Oryza sativa].	219	707	2e-30
Pi-ta [Oryza sativa]	221	734	5e-22
N [N. glutinosa]	253	995	4e-13
RPS2 [A. thaliana]	253	992	4e-26
Mla1 [Hordeum vulgare].	256	808	6e-33
Xa1 [Oryza sativa]	704	1294	3e-29

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2685.m00127

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)